Mantid
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High-level interface for setting sample metadata on a workspace. More...
#include <SetSample.h>
Public Member Functions | |
const std::string | category () const override final |
Algorithm's category for identification. More... | |
const std::string | name () const override final |
Algorithms name for identification. More... | |
const std::vector< std::string > | seeAlso () const override |
Function to return all of the seeAlso (these are not validated) algorithms related to this algorithm.A default implementation is provided. More... | |
const std::string | summary () const override final |
Algorithm's summary for use in the GUI and help. More... | |
int | version () const override final |
Algorithm's version for identification. More... | |
Public Member Functions inherited from Mantid::API::Algorithm | |
Algorithm () | |
Constructor. More... | |
Algorithm (const Algorithm &)=delete | |
Algorithm & | operator= (const Algorithm &)=delete |
~Algorithm () override | |
Virtual destructor. More... | |
void | initialize () override |
Initialization method invoked by the framework. More... | |
bool | execute () override final |
The actions to be performed by the algorithm on a dataset. More... | |
void | addTimer (const std::string &name, const Kernel::time_point_ns &begin, const Kernel::time_point_ns &end) |
void | executeAsChildAlg () override |
Execute as a Child Algorithm. More... | |
ExecutionState | executionState () const override |
Gets the current execution state. More... | |
ResultState | resultState () const override |
Gets the current result State. More... | |
bool | isInitialized () const override |
Has the Algorithm already been initialized. More... | |
bool | isExecuted () const override |
Has the Algorithm already been executed successfully. More... | |
bool | isRunning () const override |
True if the algorithm is running. More... | |
bool | isReadyForGarbageCollection () const override |
True if the algorithm is ready for garbage collection. More... | |
bool | isChild () const override |
To query whether algorithm is a child. More... | |
void | setChild (const bool isChild) override |
To set whether algorithm is a child. More... | |
void | enableHistoryRecordingForChild (const bool on) override |
Change the state of the history recording flag. More... | |
bool | isRecordingHistoryForChild () |
void | setAlwaysStoreInADS (const bool doStore) override |
Do we ALWAYS store in the AnalysisDataService? This is set to true for python algorithms' child algorithms. More... | |
bool | getAlwaysStoreInADS () const override |
Returns true if we always store in the AnalysisDataService. More... | |
void | setRethrows (const bool rethrow) override |
Set whether the algorithm will rethrow exceptions. More... | |
Poco::ActiveResult< bool > | executeAsync () override |
Asynchronous execution. More... | |
void | addObserver (const Poco::AbstractObserver &observer) const override |
Add an observer for a notification. More... | |
void | removeObserver (const Poco::AbstractObserver &observer) const override |
Remove an observer. More... | |
void | cancel () override |
Raises the cancel flag. More... | |
bool | getCancel () const |
Returns the cancellation state. More... | |
Kernel::Logger & | getLogger () const |
Returns a reference to the logger. More... | |
void | setLogging (const bool value) override |
Logging can be disabled by passing a value of false. More... | |
bool | isLogging () const override |
returns the status of logging, True = enabled More... | |
void | setLoggingOffset (const int value) override |
gets the logging priority offset More... | |
int | getLoggingOffset () const override |
returns the logging priority offset More... | |
void | setAlgStartupLogging (const bool enabled) override |
disable Logging of start and end messages More... | |
bool | getAlgStartupLogging () const override |
get the state of Logging of start and end messages More... | |
void | setChildStartProgress (const double startProgress) const override |
setting the child start progress More... | |
void | setChildEndProgress (const double endProgress) const override |
setting the child end progress More... | |
std::string | toString () const override |
Serialize an object to a string. More... | |
::Json::Value | toJson () const override |
Serialize an object to a json object. More... | |
virtual std::shared_ptr< Algorithm > | createChildAlgorithm (const std::string &name, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true, const int &version=-1) |
Create a Child Algorithm. More... | |
void | setupAsChildAlgorithm (const Algorithm_sptr &algorithm, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true) |
Setup algorithm as child algorithm. More... | |
void | trackAlgorithmHistory (std::shared_ptr< AlgorithmHistory > parentHist) |
set whether we wish to track the child algorithm's history and pass it the parent object to fill. More... | |
void | findWorkspaces (WorkspaceVector &workspaces, unsigned int direction, bool checkADS=false) const |
Populate lists of the workspace properties for a given direction (InOut workspaces are included in both input/output) More... | |
virtual bool | checkGroups () |
Check the input workspace properties for groups. More... | |
virtual bool | processGroups () |
Process WorkspaceGroup inputs. More... | |
void | copyNonWorkspaceProperties (IAlgorithm *alg, int periodNum) |
Copy all the non-workspace properties from this to alg. More... | |
const Parallel::Communicator & | communicator () const |
Returns a const reference to the (MPI) communicator of the algorithm. More... | |
void | setCommunicator (const Parallel::Communicator &communicator) |
Sets the (MPI) communicator of the algorithm. More... | |
void | declareProperty (std::unique_ptr< Kernel::Property > p, const std::string &doc="") override |
Add a property to the list of managed properties. More... | |
void | declareOrReplaceProperty (std::unique_ptr< Kernel::Property > p, const std::string &doc="") override |
Add or replace property in the list of managed properties. More... | |
void | resetProperties () override |
Reset property values back to initial values (blank or default values) More... | |
void | setProperties (const std::string &propertiesJson, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false) override |
Set the ordered list of properties by one string of values, separated by semicolons. More... | |
void | setProperties (const ::Json::Value &jsonValue, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false) override |
Sets all the declared properties from a json object. More... | |
void | setPropertiesWithString (const std::string &propertiesString, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >()) override |
Sets all the declared properties from a string. More... | |
void | setPropertyValue (const std::string &name, const std::string &value) override |
Set the value of a property by string N.B. More... | |
void | setPropertyValueFromJson (const std::string &name, const Json::Value &value) override |
Set the value of a property by Json::Value object. More... | |
void | setPropertyOrdinal (const int &index, const std::string &value) override |
Set the value of a property by an index N.B. More... | |
virtual void | copyPropertiesFrom (const Algorithm &alg) |
Make m_properties point to the same PropertyManager as alg.m_properties. More... | |
bool | existsProperty (const std::string &name) const override |
Checks whether the named property is already in the list of managed property. More... | |
bool | validateProperties () const override |
Validates all the properties in the collection. More... | |
size_t | propertyCount () const override |
Count the number of properties under management. More... | |
std::string | getPropertyValue (const std::string &name) const override |
Get the value of a property as a string. More... | |
const std::vector< Kernel::Property * > & | getProperties () const override |
Get the list of managed properties. More... | |
std::vector< std::string > | getDeclaredPropertyNames () const noexcept override |
Return the list of declared property names. More... | |
TypedValue | getProperty (const std::string &name) const override |
Get the value of a property. More... | |
std::string | asString (bool withDefaultValues=false) const override |
Return the property manager serialized as a string. More... | |
::Json::Value | asJson (bool withDefaultValues=false) const override |
Return the property manager serialized as a json object. More... | |
bool | isDefault (const std::string &name) const |
void | removeProperty (const std::string &name, const bool delproperty=true) override |
Removes the property from management. More... | |
std::unique_ptr< Kernel::Property > | takeProperty (const size_t index) override |
Removes the property from management and returns a pointer to it. More... | |
void | clear () override |
Clears all properties under management. More... | |
void | afterPropertySet (const std::string &) override |
Override this method to perform a custom action right after a property was set. More... | |
void | filterByTime (const Types::Core::DateAndTime &, const Types::Core::DateAndTime &) override |
void | splitByTime (std::vector< Kernel::SplittingInterval > &, std::vector< Kernel::PropertyManager * >) const override |
void | filterByProperty (const Kernel::TimeSeriesProperty< bool > &, const std::vector< std::string > &) override |
Kernel::Property * | getPointerToProperty (const std::string &name) const override |
Get a property by name. More... | |
Kernel::Property * | getPointerToPropertyOrdinal (const int &index) const override |
Get a property by an index. More... | |
virtual void | declareProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc="", const unsigned int direction=Direction::Input) |
Add a property of the template type to the list of managed properties. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const std::string &doc, const unsigned int direction=Direction::Input) |
Add a property to the list of managed properties with no validator. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const unsigned int direction) |
Add a property of the template type to the list of managed properties. More... | |
void | declareProperty (const std::string &name, const char *value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc=std::string(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const std::string &doc, IValidator_sptr validator=std::make_shared< NullValidator >(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const unsigned int direction) |
Add a property of string type to the list of managed properties. More... | |
const std::vector< std::string > | categories () const override |
Function to return all of the categories that contain this algorithm. More... | |
const std::string | categorySeparator () const override |
Function to return the separator token for the category string. More... | |
const std::string | alias () const override |
function to return any aliases to the algorithm; A default implementation is provided More... | |
const std::string | aliasDeprecated () const override |
Expiration date (in ISO8601 format) for the algorithm aliases; default implementation for no expiration date. More... | |
const std::string | helpURL () const override |
function to return URL for algorithm documentation; A default implementation is provided. More... | |
template<typename T , typename = typename std::enable_if<std::is_convertible<T *, MatrixWorkspace *>::value>::type> | |
std::tuple< std::shared_ptr< T >, Indexing::SpectrumIndexSet > | getWorkspaceAndIndices (const std::string &name) const |
template<typename T1 , typename T2 , typename = typename std::enable_if<std::is_convertible<T1 *, MatrixWorkspace *>::value>::type, typename = typename std::enable_if<std::is_convertible<T2 *, std::string *>::value || std::is_convertible<T2 *, std::vector<int64_t> *>::value>::type> | |
void | setWorkspaceInputProperties (const std::string &name, const std::shared_ptr< T1 > &wksp, IndexType type, const T2 &list) |
template<typename T1 , typename T2 , typename = typename std::enable_if<std::is_convertible<T1 *, MatrixWorkspace *>::value>::type, typename = typename std::enable_if<std::is_convertible<T2 *, std::string *>::value || std::is_convertible<T2 *, std::vector<int64_t> *>::value>::type> | |
void | setWorkspaceInputProperties (const std::string &name, const std::string &wsName, IndexType type, const T2 &list) |
const std::string | workspaceMethodName () const override |
const std::vector< std::string > | workspaceMethodOn () const override |
const std::string | workspaceMethodInputProperty () const override |
AlgorithmID | getAlgorithmID () const override |
Algorithm ID. More... | |
virtual void | addObserver (const Poco::AbstractObserver &observer) const =0 |
Add an observer for a notification. More... | |
virtual const std::string | alias () const =0 |
function to return any aliases of the algorithm. More... | |
virtual const std::string | aliasDeprecated () const =0 |
Expiration date (in ISO8601 format) for the algorithm aliases. Empty if no expiration date. More... | |
virtual void | cancel ()=0 |
Raises the cancel flag. More... | |
virtual const std::vector< std::string > | categories () const =0 |
Function to return all of the categories that contain this algorithm. More... | |
virtual const std::string | category () const =0 |
function to return a category of the algorithm. More... | |
virtual const std::string | categorySeparator () const =0 |
Function to return the separator token for the category string. More... | |
virtual void | enableHistoryRecordingForChild (const bool on)=0 |
If true history will be recorded for a child. More... | |
virtual bool | execute ()=0 |
System execution. More... | |
virtual void | executeAsChildAlg ()=0 |
Execute as a Child Algorithm, with try/catch. More... | |
virtual Poco::ActiveResult< bool > | executeAsync ()=0 |
Asynchronous execution of the algorithm. More... | |
virtual ExecutionState | executionState () const =0 |
Gets the current execution state. More... | |
virtual AlgorithmID | getAlgorithmID () const =0 |
Algorithm ID. More... | |
virtual bool | getAlgStartupLogging () const =0 |
get the state of Logging of start and end messages More... | |
virtual bool | getAlwaysStoreInADS () const =0 |
To query whether the output is stored in the analysis data service. More... | |
virtual int | getLoggingOffset () const =0 |
returns the logging priority offset More... | |
virtual const std::string | helpURL () const =0 |
function to return an optional URL for documentation. More... | |
virtual void | initialize ()=0 |
Initialization method invoked by the framework. More... | |
virtual bool | isChild () const =0 |
To query whether algorithm is a child. Default to false. More... | |
virtual bool | isExecuted () const =0 |
Check whether the algorithm has been executed sucessfully. More... | |
virtual bool | isInitialized () const =0 |
Check whether the algorithm is initialized properly. More... | |
virtual bool | isLogging () const =0 |
returns the status of logging, True = enabled More... | |
virtual bool | isReadyForGarbageCollection () const =0 |
True if the algorithm is ready for garbage collection. More... | |
virtual bool | isRunning () const =0 |
True if the algorithm is running. More... | |
virtual const std::string | name () const =0 |
function to return a name of the algorithm, must be overridden in all algorithms More... | |
virtual void | removeObserver (const Poco::AbstractObserver &observer) const =0 |
Remove an observer. More... | |
virtual ResultState | resultState () const =0 |
Gets the currnet result State. More... | |
virtual const std::vector< std::string > | seeAlso () const =0 |
Function to return all of the seeAlso algorithms related to this algorithm. More... | |
virtual void | setAlgStartupLogging (const bool enabled)=0 |
disable Logging of start and end messages More... | |
virtual void | setAlwaysStoreInADS (const bool doStore)=0 |
Set whether we always store the output in the analysis data service. More... | |
virtual void | setChild (const bool isChild)=0 |
To set whether algorithm is a child. More... | |
virtual void | setChildEndProgress (const double endProgress) const =0 |
setting the child end progress More... | |
virtual void | setChildStartProgress (const double startProgress) const =0 |
setting the child start progress More... | |
virtual void | setLogging (const bool value)=0 |
Logging can be disabled by passing a value of false. More... | |
virtual void | setLoggingOffset (const int value)=0 |
gets the logging priority offset More... | |
virtual void | setRethrows (const bool rethrow)=0 |
To query whether an algorithm should rethrow exceptions when executing. More... | |
virtual const std::string | summary () const =0 |
function returns a summary message that will be displayed in the default GUI, and in the help. More... | |
virtual ::Json::Value | toJson () const =0 |
Serialize an algorithm as Json. More... | |
virtual std::string | toString () const =0 |
Serialize an algorithm. More... | |
virtual std::map< std::string, std::string > | validateInputs ()=0 |
Method checking errors on ALL the inputs, before execution. More... | |
virtual int | version () const =0 |
function to return a version of the algorithm, must be overridden in all algorithms More... | |
Algorithms As Methods | |
Public Member Functions inherited from Mantid::Kernel::IPropertyManager | |
virtual ::Json::Value | asJson (bool withDefaultValues=false) const =0 |
Return the property manager serialized as a json object. More... | |
virtual std::string | asString (bool withDefaultValues=false) const =0 |
Return the property manager serialized as a string. More... | |
virtual void | declareOrReplaceProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
void | declareProperty (const std::string &name, const char *value, const std::string &doc, IValidator_sptr validator=std::make_shared< NullValidator >(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const unsigned int direction) |
Add a property of string type to the list of managed properties. More... | |
void | declareProperty (const std::string &name, const char *value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc=std::string(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const std::string &doc, const unsigned int direction=Direction::Input) |
Add a property to the list of managed properties with no validator. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const unsigned int direction) |
Add a property of the template type to the list of managed properties. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc="", const unsigned int direction=Direction::Input) |
Add a property of the template type to the list of managed properties. More... | |
virtual void | declareProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
virtual bool | existsProperty (const std::string &name) const =0 |
Checks whether the named property is already in the list of managed property. More... | |
virtual void | filterByProperty (const TimeSeriesProperty< bool > &, const std::vector< std::string > &)=0 |
virtual void | filterByTime (const Types::Core::DateAndTime &, const Types::Core::DateAndTime &)=0 |
virtual std::vector< std::string > | getDeclaredPropertyNames () const noexcept=0 |
Get the list of managed property names. More... | |
virtual Property * | getPointerToProperty (const std::string &name) const =0 |
Get a pointer to property by name. More... | |
virtual const std::vector< Property * > & | getProperties () const =0 |
Get the list of managed properties. More... | |
std::vector< Property * > | getPropertiesInGroup (const std::string &group) const |
Get the list of managed properties in a given group. More... | |
virtual TypedValue | getProperty (const std::string &name) const =0 |
Get the value of a property. More... | |
virtual std::string | getPropertyValue (const std::string &name) const =0 |
Get the value of a property as a string. More... | |
virtual size_t | propertyCount () const =0 |
Returns the number of properties under management. More... | |
virtual void | removeProperty (const std::string &name, const bool delproperty=true)=0 |
Removes the property from management. More... | |
virtual void | resetProperties ()=0 |
virtual void | setProperties (const ::Json::Value &jsonValue, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false)=0 |
Sets all the properties from a json object. More... | |
virtual void | setProperties (const std::string &propertiesJson, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false)=0 |
Sets all properties from a string. More... | |
virtual void | setPropertiesWithString (const std::string &propertiesString, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >())=0 |
Sets all the declared properties from a string. More... | |
IPropertyManager * | setProperty (const std::string &name, const char *value) |
Specialised version of setProperty template method to handle const char *. More... | |
IPropertyManager * | setProperty (const std::string &name, const std::string &value) |
Specialised version of setProperty template method to handle std::string. More... | |
template<typename T > | |
IPropertyManager * | setProperty (const std::string &name, const T &value) |
Templated method to set the value of a PropertyWithValue. More... | |
template<typename T > | |
IPropertyManager * | setProperty (const std::string &name, std::unique_ptr< T > value) |
Templated method to set the value of a PropertyWithValue from a std::unique_ptr. More... | |
void | setPropertyGroup (const std::string &name, const std::string &group) |
Set the group for a given property. More... | |
virtual void | setPropertyOrdinal (const int &index, const std::string &value)=0 |
Set the value of a property by an index. More... | |
void | setPropertySettings (const std::string &name, std::unique_ptr< IPropertySettings > settings) |
virtual void | setPropertyValue (const std::string &name, const std::string &value)=0 |
Sets property value from a string. More... | |
virtual void | setPropertyValueFromJson (const std::string &name, const Json::Value &value)=0 |
Sets property value from a Json::Value. More... | |
virtual void | splitByTime (std::vector< SplittingInterval > &, std::vector< PropertyManager * >) const =0 |
virtual std::unique_ptr< Property > | takeProperty (const size_t index)=0 |
Removes the property from management and returns a pointer to it. More... | |
void | updatePropertyValues (const IPropertyManager &other) |
Update values of the existing properties. More... | |
virtual bool | validateProperties () const =0 |
Validates all the properties in the collection. More... | |
virtual | ~IPropertyManager ()=default |
Private Member Functions | |
void | assertNonNegative (std::map< std::string, std::string > &errors, const Kernel::PropertyManager &args, const std::string &flavour, const std::vector< const std::string * > &keys) |
Ensures there is no specified property with negative value. More... | |
std::string | createCylinderLikeXML (const Kernel::PropertyManager &args, const Geometry::ReferenceFrame &refFrame, bool hollow, const std::string &id="sample-shape") const |
Create the XML required to define a cylinder from the given args. More... | |
std::string | createFlatPlateHolderXML (const Kernel::PropertyManager &args, const Geometry::ReferenceFrame &refFrame) const |
Create the XML required to define a flat plate holder from the given args Flate plate holder is a CSG union of 2 flat plates one on each side of the sample The front and back holders are supposed to have the same width and height and angle as the sample Only the centre needs to be calculated taking into account the thichkness of the sample in between. More... | |
std::string | createFlatPlateXML (const Kernel::PropertyManager &args, const Geometry::ReferenceFrame &refFrame, const std::string &id="sample-shape") const |
Create the XML required to define a flat plate from the given args. More... | |
std::string | createHollowCylinderHolderXML (const Kernel::PropertyManager &args, const Geometry::ReferenceFrame &refFrame) const |
Create the XML required to define a hollow cylinder holder from the given args Hollow cylinder holder is a CSG union of 2 hollow cylinders one inside, one outside the sample The centre, the axis and the height are assumed to be the same as for the sample Only the inner and outer radii need to be manipulated. More... | |
std::string | createSphereXML (const Kernel::PropertyManager &args) const |
Create the XML required to define a sphere from the given args. More... | |
void | exec () override final |
Execute the algorithm. More... | |
void | init () override final |
Initialize the algorithm's properties. More... | |
bool | isDictionaryPopulated (const Kernel::PropertyManager_const_sptr &dict) const |
Checks if a json dictionary parameter is populated or not. More... | |
Kernel::PropertyManager | materialSettingsEnsureLegacyCompatibility (const Kernel::PropertyManager &materialArgs) |
Ensures the backwards compatibility of material arguments. More... | |
void | setMaterial (ReadMaterial::MaterialParameters &materialParams, const Kernel::PropertyManager &materialArgs) |
SetSample::setMaterial Configures a material from the parameters. More... | |
const Geometry::SampleEnvironment * | setSampleEnvironmentFromFile (API::ExperimentInfo &experiment, const Kernel::PropertyManager_const_sptr &args) |
Set the requested sample environment on the workspace from the environment file. More... | |
const Geometry::SampleEnvironment * | setSampleEnvironmentFromXML (API::ExperimentInfo &experiment, const Kernel::PropertyManager_const_sptr &canGeometryArgs, const Kernel::PropertyManager_const_sptr &canMaterialArgs) |
Set the requested sample environment from shape XML string. More... | |
void | setSampleShape (API::ExperimentInfo &experiment, const Kernel::PropertyManager_const_sptr &args, const Geometry::SampleEnvironment *sampleEnv) |
std::string | tryCreateXMLFromArgsOnly (const Kernel::PropertyManager &args, const Geometry::ReferenceFrame &refFrame) |
Create the required XML for a given shape type plus its arguments. More... | |
void | validateGeometry (std::map< std::string, std::string > &errors, const Kernel::PropertyManager &args, const std::string &flavour) |
Validates the geometry. More... | |
std::map< std::string, std::string > | validateInputs () override final |
Validate the inputs against each other. More... | |
void | validateMaterial (std::map< std::string, std::string > &errors, const Kernel::PropertyManager &inputArgs, const std::string &flavour) |
Validates the material. More... | |
Additional Inherited Members | |
Public Types inherited from Mantid::API::Algorithm | |
using | WorkspaceVector = std::vector< std::shared_ptr< Workspace > > |
Static Public Member Functions inherited from Mantid::API::Algorithm | |
static IAlgorithm_sptr | fromString (const std::string &input) |
De-serialize an object from a string. More... | |
static IAlgorithm_sptr | fromJson (const Json::Value &input) |
De-serialize an object from a Json. More... | |
static IAlgorithm_sptr | fromHistory (const AlgorithmHistory &history) |
Construct an object from a history entry. More... | |
Public Attributes inherited from Mantid::API::Algorithm | |
bool | calledByAlias = false |
Flag to indicate if the algorithm is called by its alias. More... | |
Protected Member Functions inherited from Mantid::API::Algorithm | |
void | exec (Parallel::ExecutionMode executionMode) |
Runs the algorithm with the specified execution mode. More... | |
virtual void | execDistributed () |
Runs the algorithm in distributed execution mode. More... | |
virtual void | execMasterOnly () |
Runs the algorithm in master-only execution mode. More... | |
virtual Parallel::ExecutionMode | getParallelExecutionMode (const std::map< std::string, Parallel::StorageMode > &storageModes) const |
Get correct execution mode based on input storage modes for an MPI run. More... | |
virtual const std::string | workspaceMethodOnTypes () const |
Returns a semi-colon separated list of workspace types to attach this algorithm. More... | |
void | cacheWorkspaceProperties () |
Go through the properties and cache the input/output workspace properties for later use. More... | |
void | cacheInputWorkspaceHistories () |
Cache the histories of any input workspaces so they can be copied over after algorithm completion. More... | |
void | setExecutionState (const ExecutionState state) |
Sets the current execution state. More... | |
void | setResultState (const ResultState state) |
Sets the result execution state. More... | |
void | store () |
Stores any output workspaces into the AnalysisDataService. More... | |
void | progress (double p, const std::string &msg="", double estimatedTime=0.0, int progressPrecision=0) |
Sends ProgressNotification. More... | |
void | interruption_point () |
This is called during long-running operations, and check if the algorithm has requested that it be cancelled. More... | |
Poco::NotificationCenter & | notificationCenter () const |
Return a reference to the algorithm's notification dispatcher. More... | |
void | handleChildProgressNotification (const Poco::AutoPtr< ProgressNotification > &pNf) |
Observation slot for child algorithm progress notification messages, these are scaled and then signalled for this algorithm. More... | |
const Poco::AbstractObserver & | progressObserver () const |
Return a reference to the algorithm's object that is reporting progress. More... | |
bool | isWorkspaceProperty (const Kernel::Property *const prop) const |
checks the property is a workspace property More... | |
bool | trackingHistory () |
get whether we are tracking the history for this algorithm, More... | |
virtual void | fillHistory () |
Copy workspace history for input workspaces to output workspaces and record the history for ths algorithm. More... | |
virtual void | setOtherProperties (IAlgorithm *alg, const std::string &propertyName, const std::string &propertyValue, int periodNum) |
Virtual method to set the non workspace properties for this algorithm. More... | |
template<typename T , const int AllowedIndexTypes = static_cast<int>(IndexType::WorkspaceIndex), typename... WSPropArgs, typename = typename std::enable_if<std::is_convertible<T *, MatrixWorkspace *>::value>::type> | |
void | declareWorkspaceInputProperties (const std::string &propertyName, const std::string &doc, WSPropArgs &&...wsPropArgs) |
Protected Member Functions inherited from Mantid::Kernel::IPropertyManager | |
virtual void | afterPropertySet (const std::string &) |
Override this method to perform a custom action right after a property was set. More... | |
virtual void | clear ()=0 |
Clears all properties under management. More... | |
virtual Property * | getPointerToPropertyOrdinal (const int &index) const =0 |
Get a property by an index. More... | |
template<typename T > | |
T | getValue (const std::string &name) const |
Templated method to get the value of a property. More... | |
template<> | |
MANTID_KERNEL_DLL PropertyManager_sptr | getValue (const std::string &name) const |
template<> | |
MANTID_KERNEL_DLL PropertyManager_const_sptr | getValue (const std::string &name) const |
Static Protected Member Functions inherited from Mantid::API::Algorithm | |
template<typename NumT > | |
static bool | isEmpty (const NumT toCheck) |
checks that the value was not set by users, uses the value in empty double/int. More... | |
Protected Attributes inherited from Mantid::API::Algorithm | |
std::atomic< bool > | m_cancel |
Set to true to stop execution. More... | |
std::atomic< bool > | m_parallelException |
Set if an exception is thrown, and not caught, within a parallel region. More... | |
std::vector< IWorkspaceProperty * > | m_inputWorkspaceProps |
All the WorkspaceProperties that are Input or InOut. Set in execute() More... | |
std::shared_ptr< AlgorithmHistory > | m_history |
Pointer to the history for the algorithm being executed. More... | |
Kernel::Logger | m_log |
Logger for this algorithm. More... | |
Kernel::Logger & | g_log |
std::shared_ptr< AlgorithmHistory > | m_parentHistory |
Pointer to the parent history object (if set) More... | |
std::vector< WorkspaceVector > | m_unrolledInputWorkspaces |
One vector of workspaces for each input workspace property. More... | |
size_t | m_groupSize |
Size of the group(s) being processed. More... | |
bool | m_usingBaseProcessGroups = false |
distinguish between base processGroups() and overriden/algorithm specific versions More... | |
Static Protected Attributes inherited from Mantid::API::Algorithm | |
static size_t | g_execCount = 0 |
Counter to keep track of algorithm execution order. More... | |
High-level interface for setting sample metadata on a workspace.
Definition at line 27 of file SetSample.h.
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private |
Ensures there is no specified property with negative value.
errors | map |
geomArgs | geometry arguments |
flavour | sample or container |
keys | the vector of property names to check |
Definition at line 395 of file SetSample.cpp.
Referenced by validateInputs().
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finaloverridevirtual |
Algorithm's category for identification.
Reimplemented from Mantid::API::Algorithm.
Definition at line 270 of file SetSample.cpp.
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private |
Create the XML required to define a cylinder from the given args.
args | A user-supplied dict of args |
refFrame | Defines the reference frame for the shape |
hollow | True if an annulus is to be created |
id | A generic id for the shape element |
Definition at line 1002 of file SetSample.cpp.
References Mantid::Kernel::PropertyManager::existsProperty(), Mantid::Kernel::PropertyManager::getPropertyValue(), height, innerRadius, Mantid::Geometry::ReferenceFrame::pointingUp(), Mantid::Kernel::V3D::X(), Mantid::Kernel::V3D::Y(), and Mantid::Kernel::V3D::Z().
Referenced by createHollowCylinderHolderXML(), and tryCreateXMLFromArgsOnly().
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private |
Create the XML required to define a flat plate holder from the given args Flate plate holder is a CSG union of 2 flat plates one on each side of the sample The front and back holders are supposed to have the same width and height and angle as the sample Only the centre needs to be calculated taking into account the thichkness of the sample in between.
args | A user-supplied dict of args |
refFrame | Defines the reference frame for the shape |
Definition at line 924 of file SetSample.cpp.
References createFlatPlateXML(), Mantid::Kernel::PropertyManager::existsProperty(), Mantid::Geometry::ReferenceFrame::getHandedness(), Mantid::Geometry::ReferenceFrame::pointingAlongBeam(), Mantid::Geometry::ReferenceFrame::pointingHorizontal(), Mantid::Geometry::Right, and Mantid::Kernel::IPropertyManager::setProperty().
Referenced by tryCreateXMLFromArgsOnly().
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private |
Create the XML required to define a flat plate from the given args.
args | A user-supplied dict of args |
refFrame | Defines the reference frame for the shape |
id | A generic id for the shape element |
Definition at line 853 of file SetSample.cpp.
References Mantid::Geometry::angDegrees, Mantid::Geometry::CCW, Mantid::Kernel::PropertyManager::existsProperty(), Mantid::Geometry::Goniometer::getR(), Mantid::Geometry::ReferenceFrame::pointingAlongBeam(), Mantid::Geometry::ReferenceFrame::pointingHorizontal(), Mantid::Geometry::ReferenceFrame::pointingUp(), Mantid::Geometry::Goniometer::pushAxis(), Mantid::Kernel::Matrix< T >::rotate(), rotation, Mantid::Geometry::x, Mantid::Kernel::V3D::X(), Mantid::Geometry::y, and Mantid::Geometry::z.
Referenced by createFlatPlateHolderXML(), and tryCreateXMLFromArgsOnly().
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private |
Create the XML required to define a hollow cylinder holder from the given args Hollow cylinder holder is a CSG union of 2 hollow cylinders one inside, one outside the sample The centre, the axis and the height are assumed to be the same as for the sample Only the inner and outer radii need to be manipulated.
args | A user-supplied dict of args |
refFrame | Defines the reference frame for the shape |
Definition at line 981 of file SetSample.cpp.
References createCylinderLikeXML().
Referenced by tryCreateXMLFromArgsOnly().
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private |
Create the XML required to define a sphere from the given args.
args | A user-supplied dict of args |
Definition at line 1059 of file SetSample.cpp.
References Mantid::Kernel::PropertyManager::getProperty(), and radius.
Referenced by tryCreateXMLFromArgsOnly().
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finaloverrideprivatevirtual |
Execute the algorithm.
Implements Mantid::API::Algorithm.
Definition at line 512 of file SetSample.cpp.
References Mantid::DataHandling::ReadMaterial::buildMaterial(), Mantid::Kernel::PropertyManager::declareProperty(), Mantid::Kernel::PropertyManager::existsProperty(), Mantid::API::Algorithm::getProperty(), isDictionaryPopulated(), materialSettingsEnsureLegacyCompatibility(), setMaterial(), Mantid::DataHandling::ReadMaterial::setMaterialParameters(), setSampleEnvironmentFromFile(), setSampleEnvironmentFromXML(), setSampleShape(), and workspace.
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finaloverrideprivatevirtual |
Initialize the algorithm's properties.
Implements Mantid::API::Algorithm.
Definition at line 487 of file SetSample.cpp.
References Mantid::API::Algorithm::declareProperty(), Mantid::Kernel::Direction::InOut, and Mantid::Kernel::Direction::Input.
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private |
Checks if a json dictionary parameter is populated or not.
dict | map |
Definition at line 410 of file SetSample.cpp.
Referenced by exec(), setSampleShape(), and validateInputs().
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private |
Ensures the backwards compatibility of material arguments.
materialArgs | const input material arguments |
Definition at line 1079 of file SetSample.cpp.
References Mantid::Kernel::PropertyManager::declareProperty(), Mantid::Kernel::PropertyManager::existsProperty(), Mantid::Kernel::PropertyManager::getProperty(), and Mantid::Kernel::IPropertyManager::setProperty().
Referenced by exec(), setSampleEnvironmentFromXML(), and validateMaterial().
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finaloverridevirtual |
Algorithms name for identification.
Implements Mantid::API::Algorithm.
Definition at line 264 of file SetSample.cpp.
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inlineoverridevirtual |
Function to return all of the seeAlso (these are not validated) algorithms related to this algorithm.A default implementation is provided.
Reimplemented from Mantid::API::Algorithm.
Definition at line 31 of file SetSample.h.
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private |
SetSample::setMaterial Configures a material from the parameters.
materialParams | : output material parameters object |
materialArgs | : input material arguments, can be altered (see comment inside) |
Definition at line 660 of file SetSample.cpp.
References Mantid::DataHandling::ReadMaterial::MaterialParameters::atomicNumber, Mantid::Kernel::MaterialBuilder::Atoms, Mantid::DataHandling::ReadMaterial::MaterialParameters::attenuationXSection, Mantid::DataHandling::ReadMaterial::MaterialParameters::chemicalSymbol, Mantid::DataHandling::ReadMaterial::MaterialParameters::coherentXSection, Mantid::Kernel::PropertyManager::existsProperty(), Mantid::Kernel::MaterialBuilder::FormulaUnits, Mantid::Kernel::PropertyManager::getProperty(), Mantid::Kernel::PropertyManager::getPropertyValue(), Mantid::DataHandling::ReadMaterial::MaterialParameters::incoherentXSection, Mantid::DataHandling::ReadMaterial::MaterialParameters::mass, Mantid::DataHandling::ReadMaterial::MaterialParameters::massDensity, Mantid::DataHandling::ReadMaterial::MaterialParameters::massNumber, Mantid::DataHandling::ReadMaterial::MaterialParameters::numberDensity, Mantid::DataHandling::ReadMaterial::MaterialParameters::numberDensityEffective, Mantid::DataHandling::ReadMaterial::MaterialParameters::numberDensityUnit, Mantid::DataHandling::ReadMaterial::MaterialParameters::packingFraction, Mantid::DataHandling::ReadMaterial::MaterialParameters::scatteringXSection, Mantid::DataHandling::ReadMaterial::MaterialParameters::unitCellVolume, Mantid::DataHandling::ReadMaterial::MaterialParameters::volume, and Mantid::DataHandling::ReadMaterial::MaterialParameters::zParameter.
Referenced by exec(), setSampleEnvironmentFromXML(), and validateMaterial().
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private |
Set the requested sample environment on the workspace from the environment file.
exptInfo | A reference to the ExperimentInfo to receive the environment |
args | The dictionary of flags for the environment |
Definition at line 574 of file SetSample.cpp.
References Mantid::DataHandling::SampleEnvironmentFactory::create(), Mantid::API::Sample::getEnvironment(), Mantid::API::ExperimentInfo::getInstrument(), Mantid::Kernel::SingletonHolder< T >::Instance(), Mantid::API::ExperimentInfo::mutableSample(), Mantid::DataHandling::SampleEnvironmentFactory::parseSpec(), Mantid::API::ExperimentInfo::sample(), and Mantid::API::Sample::setEnvironment().
Referenced by exec().
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private |
Set the requested sample environment from shape XML string.
exptInfo | A reference to the ExperimentInfo to receive the environment |
canGeomArgs | The dictionary of flags for the environment |
canMaterialArgs | The dictionary of material parameters |
Definition at line 625 of file SetSample.cpp.
References Mantid::DataHandling::ReadMaterial::buildMaterial(), Mantid::Geometry::ShapeFactory::createShape(), Mantid::API::Sample::getEnvironment(), Mantid::API::ExperimentInfo::getInstrument(), materialSettingsEnsureLegacyCompatibility(), Mantid::API::ExperimentInfo::mutableSample(), Mantid::API::ExperimentInfo::sample(), Mantid::API::Sample::setEnvironment(), setMaterial(), Mantid::DataHandling::ReadMaterial::setMaterialParameters(), tryCreateXMLFromArgsOnly(), and Mantid::DataHandling::ReadMaterial::MaterialParameters::volume.
Referenced by exec().
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private |
experiment | A reference to the experiment to be affected |
args | The user-supplied dictionary of flags |
sampleEnv | A pointer to the sample environment if one exists, otherwise null |
Definition at line 724 of file SetSample.cpp.
References Mantid::Geometry::ShapeFactory::addGoniometerTag(), Mantid::Geometry::SampleEnvironment::getContainer(), Mantid::API::Run::getGoniometer(), Mantid::API::ExperimentInfo::getInstrument(), Mantid::API::Sample::getMaterial(), Mantid::Geometry::Goniometer::getR(), Mantid::Geometry::Container::hasCustomizableSampleShape(), Mantid::Geometry::Container::hasFixedSampleShape(), isDictionaryPopulated(), Mantid::API::ExperimentInfo::mutableSample(), Mantid::Kernel::Matrix< T >::rotate(), Mantid::API::ExperimentInfo::run(), Mantid::API::ExperimentInfo::sample(), Mantid::DataHandling::CreateSampleShape::setSampleShape(), Mantid::API::Sample::setShape(), and tryCreateXMLFromArgsOnly().
Referenced by exec().
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finaloverridevirtual |
Algorithm's summary for use in the GUI and help.
Implements Mantid::API::Algorithm.
Definition at line 273 of file SetSample.cpp.
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private |
Create the required XML for a given shape type plus its arguments.
args | A dict of flags defining the shape |
refFrame | Defines the reference frame for the shape |
Definition at line 812 of file SetSample.cpp.
References createCylinderLikeXML(), createFlatPlateHolderXML(), createFlatPlateXML(), createHollowCylinderHolderXML(), createSphereXML(), Mantid::Kernel::Logger::debug(), Mantid::Kernel::PropertyManager::existsProperty(), Mantid::API::Algorithm::g_log, Mantid::Kernel::PropertyManager::getPropertyValue(), and Mantid::Kernel::Logger::is().
Referenced by setSampleEnvironmentFromXML(), and setSampleShape().
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private |
Validates the geometry.
errors | map |
geomArgs | geometry arguments |
flavour | sample or container |
Definition at line 283 of file SetSample.cpp.
References Mantid::Geometry::ShapeFactory::createShape(), and Mantid::Kernel::PropertyManager::getPropertyValue().
Referenced by validateInputs().
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finaloverrideprivatevirtual |
Validate the inputs against each other.
Reimplemented from Mantid::API::Algorithm.
Definition at line 419 of file SetSample.cpp.
References assertNonNegative(), Mantid::API::Algorithm::getProperty(), isDictionaryPopulated(), validateGeometry(), and validateMaterial().
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private |
Validates the material.
errors | map |
inputArgs | material arguments |
flavour | sample or container |
Definition at line 373 of file SetSample.cpp.
References error, materialSettingsEnsureLegacyCompatibility(), setMaterial(), and Mantid::DataHandling::ReadMaterial::validateInputs().
Referenced by validateInputs().
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finaloverridevirtual |
Algorithm's version for identification.
Implements Mantid::API::Algorithm.
Definition at line 267 of file SetSample.cpp.