Mantid
|
LoadILLReflectometry : Loads an ILL reflectometry Nexus data file. More...
#include <LoadILLReflectometry.h>
Public Member Functions | |
const std::string | category () const override |
Algorithm's category for search and find. More... | |
int | confidence (Kernel::NexusDescriptor &descriptor) const override |
Returns a confidence value that this algorithm can load a file. More... | |
double | doubleFromRun (const std::string &entryName) const |
LoadILLReflectometry::doubleFromRun Returns a sample log a single double. More... | |
LoadILLReflectometry ()=default | |
const std::string | name () const override |
Algorithm's name for identification. More... | |
const std::vector< std::string > | seeAlso () const override |
Function to return all of the seeAlso (these are not validated) algorithms related to this algorithm.A default implementation is provided. More... | |
const std::string | summary () const override |
Algorithm's summary. More... | |
int | version () const override |
Algorithm's version for identification. More... | |
Public Member Functions inherited from Mantid::API::IFileLoader< Kernel::NexusDescriptor > | |
virtual int | confidence (Kernel::NexusDescriptor &descriptor) const=0 |
Returns a confidence value that this algorithm can load a file. More... | |
virtual bool | loadMutipleAsOne () |
Returns a value indicating whether or not loader wants to load multiple files into a single workspace. More... | |
Public Member Functions inherited from Mantid::API::Algorithm | |
Algorithm () | |
Constructor. More... | |
Algorithm (const Algorithm &)=delete | |
Algorithm & | operator= (const Algorithm &)=delete |
~Algorithm () override | |
Virtual destructor. More... | |
void | initialize () override |
Initialization method invoked by the framework. More... | |
bool | execute () override final |
The actions to be performed by the algorithm on a dataset. More... | |
void | addTimer (const std::string &name, const Kernel::time_point_ns &begin, const Kernel::time_point_ns &end) |
void | executeAsChildAlg () override |
Execute as a Child Algorithm. More... | |
std::map< std::string, std::string > | validateInputs () override |
Perform validation of ALL the input properties of the algorithm. More... | |
ExecutionState | executionState () const override |
Gets the current execution state. More... | |
ResultState | resultState () const override |
Gets the current result State. More... | |
bool | isInitialized () const override |
Has the Algorithm already been initialized. More... | |
bool | isExecuted () const override |
Has the Algorithm already been executed successfully. More... | |
bool | isRunning () const override |
True if the algorithm is running. More... | |
bool | isReadyForGarbageCollection () const override |
True if the algorithm is ready for garbage collection. More... | |
bool | isChild () const override |
To query whether algorithm is a child. More... | |
void | setChild (const bool isChild) override |
To set whether algorithm is a child. More... | |
void | enableHistoryRecordingForChild (const bool on) override |
Change the state of the history recording flag. More... | |
bool | isRecordingHistoryForChild () |
void | setAlwaysStoreInADS (const bool doStore) override |
Do we ALWAYS store in the AnalysisDataService? This is set to true for python algorithms' child algorithms. More... | |
bool | getAlwaysStoreInADS () const override |
Returns true if we always store in the AnalysisDataService. More... | |
void | setRethrows (const bool rethrow) override |
Set whether the algorithm will rethrow exceptions. More... | |
Poco::ActiveResult< bool > | executeAsync () override |
Asynchronous execution. More... | |
void | addObserver (const Poco::AbstractObserver &observer) const override |
Add an observer for a notification. More... | |
void | removeObserver (const Poco::AbstractObserver &observer) const override |
Remove an observer. More... | |
void | cancel () override |
Raises the cancel flag. More... | |
bool | getCancel () const |
Returns the cancellation state. More... | |
Kernel::Logger & | getLogger () const |
Returns a reference to the logger. More... | |
void | setLogging (const bool value) override |
Logging can be disabled by passing a value of false. More... | |
bool | isLogging () const override |
returns the status of logging, True = enabled More... | |
void | setLoggingOffset (const int value) override |
gets the logging priority offset More... | |
int | getLoggingOffset () const override |
returns the logging priority offset More... | |
void | setAlgStartupLogging (const bool enabled) override |
disable Logging of start and end messages More... | |
bool | getAlgStartupLogging () const override |
get the state of Logging of start and end messages More... | |
void | setChildStartProgress (const double startProgress) const override |
setting the child start progress More... | |
void | setChildEndProgress (const double endProgress) const override |
setting the child end progress More... | |
std::string | toString () const override |
Serialize an object to a string. More... | |
::Json::Value | toJson () const override |
Serialize an object to a json object. More... | |
virtual std::shared_ptr< Algorithm > | createChildAlgorithm (const std::string &name, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true, const int &version=-1) |
Create a Child Algorithm. More... | |
void | setupAsChildAlgorithm (const Algorithm_sptr &algorithm, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true) |
Setup algorithm as child algorithm. More... | |
void | trackAlgorithmHistory (std::shared_ptr< AlgorithmHistory > parentHist) |
set whether we wish to track the child algorithm's history and pass it the parent object to fill. More... | |
void | findWorkspaces (WorkspaceVector &workspaces, unsigned int direction, bool checkADS=false) const |
Populate lists of the workspace properties for a given direction (InOut workspaces are included in both input/output) More... | |
virtual bool | checkGroups () |
Check the input workspace properties for groups. More... | |
virtual bool | processGroups () |
Process WorkspaceGroup inputs. More... | |
void | copyNonWorkspaceProperties (IAlgorithm *alg, int periodNum) |
Copy all the non-workspace properties from this to alg. More... | |
const Parallel::Communicator & | communicator () const |
Returns a const reference to the (MPI) communicator of the algorithm. More... | |
void | setCommunicator (const Parallel::Communicator &communicator) |
Sets the (MPI) communicator of the algorithm. More... | |
void | declareProperty (std::unique_ptr< Kernel::Property > p, const std::string &doc="") override |
Add a property to the list of managed properties. More... | |
void | declareOrReplaceProperty (std::unique_ptr< Kernel::Property > p, const std::string &doc="") override |
Add or replace property in the list of managed properties. More... | |
void | resetProperties () override |
Reset property values back to initial values (blank or default values) More... | |
void | setProperties (const std::string &propertiesJson, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false) override |
Set the ordered list of properties by one string of values, separated by semicolons. More... | |
void | setProperties (const ::Json::Value &jsonValue, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false) override |
Sets all the declared properties from a json object. More... | |
void | setPropertiesWithString (const std::string &propertiesString, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >()) override |
Sets all the declared properties from a string. More... | |
void | setPropertyValue (const std::string &name, const std::string &value) override |
Set the value of a property by string N.B. More... | |
void | setPropertyValueFromJson (const std::string &name, const Json::Value &value) override |
Set the value of a property by Json::Value object. More... | |
void | setPropertyOrdinal (const int &index, const std::string &value) override |
Set the value of a property by an index N.B. More... | |
virtual void | copyPropertiesFrom (const Algorithm &alg) |
Make m_properties point to the same PropertyManager as alg.m_properties. More... | |
bool | existsProperty (const std::string &name) const override |
Checks whether the named property is already in the list of managed property. More... | |
bool | validateProperties () const override |
Validates all the properties in the collection. More... | |
size_t | propertyCount () const override |
Count the number of properties under management. More... | |
std::string | getPropertyValue (const std::string &name) const override |
Get the value of a property as a string. More... | |
const std::vector< Kernel::Property * > & | getProperties () const override |
Get the list of managed properties. More... | |
std::vector< std::string > | getDeclaredPropertyNames () const noexcept override |
Return the list of declared property names. More... | |
TypedValue | getProperty (const std::string &name) const override |
Get the value of a property. More... | |
std::string | asString (bool withDefaultValues=false) const override |
Return the property manager serialized as a string. More... | |
::Json::Value | asJson (bool withDefaultValues=false) const override |
Return the property manager serialized as a json object. More... | |
bool | isDefault (const std::string &name) const |
void | removeProperty (const std::string &name, const bool delproperty=true) override |
Removes the property from management. More... | |
std::unique_ptr< Kernel::Property > | takeProperty (const size_t index) override |
Removes the property from management and returns a pointer to it. More... | |
void | clear () override |
Clears all properties under management. More... | |
void | afterPropertySet (const std::string &) override |
Override this method to perform a custom action right after a property was set. More... | |
void | filterByTime (const Types::Core::DateAndTime &, const Types::Core::DateAndTime &) override |
void | splitByTime (std::vector< Kernel::SplittingInterval > &, std::vector< Kernel::PropertyManager * >) const override |
void | filterByProperty (const Kernel::TimeSeriesProperty< bool > &, const std::vector< std::string > &) override |
Kernel::Property * | getPointerToProperty (const std::string &name) const override |
Get a property by name. More... | |
Kernel::Property * | getPointerToPropertyOrdinal (const int &index) const override |
Get a property by an index. More... | |
virtual void | declareProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc="", const unsigned int direction=Direction::Input) |
Add a property of the template type to the list of managed properties. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const std::string &doc, const unsigned int direction=Direction::Input) |
Add a property to the list of managed properties with no validator. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const unsigned int direction) |
Add a property of the template type to the list of managed properties. More... | |
void | declareProperty (const std::string &name, const char *value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc=std::string(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const std::string &doc, IValidator_sptr validator=std::make_shared< NullValidator >(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const unsigned int direction) |
Add a property of string type to the list of managed properties. More... | |
const std::vector< std::string > | categories () const override |
Function to return all of the categories that contain this algorithm. More... | |
const std::string | categorySeparator () const override |
Function to return the separator token for the category string. More... | |
const std::string | alias () const override |
function to return any aliases to the algorithm; A default implementation is provided More... | |
const std::string | aliasDeprecated () const override |
Expiration date (in ISO8601 format) for the algorithm aliases; default implementation for no expiration date. More... | |
const std::string | helpURL () const override |
function to return URL for algorithm documentation; A default implementation is provided. More... | |
template<typename T , typename = typename std::enable_if<std::is_convertible<T *, MatrixWorkspace *>::value>::type> | |
std::tuple< std::shared_ptr< T >, Indexing::SpectrumIndexSet > | getWorkspaceAndIndices (const std::string &name) const |
template<typename T1 , typename T2 , typename = typename std::enable_if<std::is_convertible<T1 *, MatrixWorkspace *>::value>::type, typename = typename std::enable_if<std::is_convertible<T2 *, std::string *>::value || std::is_convertible<T2 *, std::vector<int64_t> *>::value>::type> | |
void | setWorkspaceInputProperties (const std::string &name, const std::shared_ptr< T1 > &wksp, IndexType type, const T2 &list) |
template<typename T1 , typename T2 , typename = typename std::enable_if<std::is_convertible<T1 *, MatrixWorkspace *>::value>::type, typename = typename std::enable_if<std::is_convertible<T2 *, std::string *>::value || std::is_convertible<T2 *, std::vector<int64_t> *>::value>::type> | |
void | setWorkspaceInputProperties (const std::string &name, const std::string &wsName, IndexType type, const T2 &list) |
const std::string | workspaceMethodName () const override |
const std::vector< std::string > | workspaceMethodOn () const override |
const std::string | workspaceMethodInputProperty () const override |
AlgorithmID | getAlgorithmID () const override |
Algorithm ID. More... | |
virtual void | addObserver (const Poco::AbstractObserver &observer) const =0 |
Add an observer for a notification. More... | |
virtual const std::string | alias () const =0 |
function to return any aliases of the algorithm. More... | |
virtual const std::string | aliasDeprecated () const =0 |
Expiration date (in ISO8601 format) for the algorithm aliases. Empty if no expiration date. More... | |
virtual void | cancel ()=0 |
Raises the cancel flag. More... | |
virtual const std::vector< std::string > | categories () const =0 |
Function to return all of the categories that contain this algorithm. More... | |
virtual const std::string | category () const =0 |
function to return a category of the algorithm. More... | |
virtual const std::string | categorySeparator () const =0 |
Function to return the separator token for the category string. More... | |
virtual void | enableHistoryRecordingForChild (const bool on)=0 |
If true history will be recorded for a child. More... | |
virtual bool | execute ()=0 |
System execution. More... | |
virtual void | executeAsChildAlg ()=0 |
Execute as a Child Algorithm, with try/catch. More... | |
virtual Poco::ActiveResult< bool > | executeAsync ()=0 |
Asynchronous execution of the algorithm. More... | |
virtual ExecutionState | executionState () const =0 |
Gets the current execution state. More... | |
virtual AlgorithmID | getAlgorithmID () const =0 |
Algorithm ID. More... | |
virtual bool | getAlgStartupLogging () const =0 |
get the state of Logging of start and end messages More... | |
virtual bool | getAlwaysStoreInADS () const =0 |
To query whether the output is stored in the analysis data service. More... | |
virtual int | getLoggingOffset () const =0 |
returns the logging priority offset More... | |
virtual const std::string | helpURL () const =0 |
function to return an optional URL for documentation. More... | |
virtual void | initialize ()=0 |
Initialization method invoked by the framework. More... | |
virtual bool | isChild () const =0 |
To query whether algorithm is a child. Default to false. More... | |
virtual bool | isExecuted () const =0 |
Check whether the algorithm has been executed sucessfully. More... | |
virtual bool | isInitialized () const =0 |
Check whether the algorithm is initialized properly. More... | |
virtual bool | isLogging () const =0 |
returns the status of logging, True = enabled More... | |
virtual bool | isReadyForGarbageCollection () const =0 |
True if the algorithm is ready for garbage collection. More... | |
virtual bool | isRunning () const =0 |
True if the algorithm is running. More... | |
virtual const std::string | name () const =0 |
function to return a name of the algorithm, must be overridden in all algorithms More... | |
virtual void | removeObserver (const Poco::AbstractObserver &observer) const =0 |
Remove an observer. More... | |
virtual ResultState | resultState () const =0 |
Gets the currnet result State. More... | |
virtual const std::vector< std::string > | seeAlso () const =0 |
Function to return all of the seeAlso algorithms related to this algorithm. More... | |
virtual void | setAlgStartupLogging (const bool enabled)=0 |
disable Logging of start and end messages More... | |
virtual void | setAlwaysStoreInADS (const bool doStore)=0 |
Set whether we always store the output in the analysis data service. More... | |
virtual void | setChild (const bool isChild)=0 |
To set whether algorithm is a child. More... | |
virtual void | setChildEndProgress (const double endProgress) const =0 |
setting the child end progress More... | |
virtual void | setChildStartProgress (const double startProgress) const =0 |
setting the child start progress More... | |
virtual void | setLogging (const bool value)=0 |
Logging can be disabled by passing a value of false. More... | |
virtual void | setLoggingOffset (const int value)=0 |
gets the logging priority offset More... | |
virtual void | setRethrows (const bool rethrow)=0 |
To query whether an algorithm should rethrow exceptions when executing. More... | |
virtual const std::string | summary () const =0 |
function returns a summary message that will be displayed in the default GUI, and in the help. More... | |
virtual ::Json::Value | toJson () const =0 |
Serialize an algorithm as Json. More... | |
virtual std::string | toString () const =0 |
Serialize an algorithm. More... | |
virtual std::map< std::string, std::string > | validateInputs ()=0 |
Method checking errors on ALL the inputs, before execution. More... | |
virtual int | version () const =0 |
function to return a version of the algorithm, must be overridden in all algorithms More... | |
Algorithms As Methods | |
Public Member Functions inherited from Mantid::Kernel::IPropertyManager | |
virtual ::Json::Value | asJson (bool withDefaultValues=false) const =0 |
Return the property manager serialized as a json object. More... | |
virtual std::string | asString (bool withDefaultValues=false) const =0 |
Return the property manager serialized as a string. More... | |
virtual void | declareOrReplaceProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
void | declareProperty (const std::string &name, const char *value, const std::string &doc, IValidator_sptr validator=std::make_shared< NullValidator >(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const unsigned int direction) |
Add a property of string type to the list of managed properties. More... | |
void | declareProperty (const std::string &name, const char *value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc=std::string(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const std::string &doc, const unsigned int direction=Direction::Input) |
Add a property to the list of managed properties with no validator. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const unsigned int direction) |
Add a property of the template type to the list of managed properties. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc="", const unsigned int direction=Direction::Input) |
Add a property of the template type to the list of managed properties. More... | |
virtual void | declareProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
virtual bool | existsProperty (const std::string &name) const =0 |
Checks whether the named property is already in the list of managed property. More... | |
virtual void | filterByProperty (const TimeSeriesProperty< bool > &, const std::vector< std::string > &)=0 |
virtual void | filterByTime (const Types::Core::DateAndTime &, const Types::Core::DateAndTime &)=0 |
virtual std::vector< std::string > | getDeclaredPropertyNames () const noexcept=0 |
Get the list of managed property names. More... | |
virtual Property * | getPointerToProperty (const std::string &name) const =0 |
Get a pointer to property by name. More... | |
virtual const std::vector< Property * > & | getProperties () const =0 |
Get the list of managed properties. More... | |
std::vector< Property * > | getPropertiesInGroup (const std::string &group) const |
Get the list of managed properties in a given group. More... | |
virtual TypedValue | getProperty (const std::string &name) const =0 |
Get the value of a property. More... | |
virtual std::string | getPropertyValue (const std::string &name) const =0 |
Get the value of a property as a string. More... | |
virtual size_t | propertyCount () const =0 |
Returns the number of properties under management. More... | |
virtual void | removeProperty (const std::string &name, const bool delproperty=true)=0 |
Removes the property from management. More... | |
virtual void | resetProperties ()=0 |
virtual void | setProperties (const ::Json::Value &jsonValue, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false)=0 |
Sets all the properties from a json object. More... | |
virtual void | setProperties (const std::string &propertiesJson, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false)=0 |
Sets all properties from a string. More... | |
virtual void | setPropertiesWithString (const std::string &propertiesString, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >())=0 |
Sets all the declared properties from a string. More... | |
IPropertyManager * | setProperty (const std::string &name, const char *value) |
Specialised version of setProperty template method to handle const char *. More... | |
IPropertyManager * | setProperty (const std::string &name, const std::string &value) |
Specialised version of setProperty template method to handle std::string. More... | |
template<typename T > | |
IPropertyManager * | setProperty (const std::string &name, const T &value) |
Templated method to set the value of a PropertyWithValue. More... | |
template<typename T > | |
IPropertyManager * | setProperty (const std::string &name, std::unique_ptr< T > value) |
Templated method to set the value of a PropertyWithValue from a std::unique_ptr. More... | |
void | setPropertyGroup (const std::string &name, const std::string &group) |
Set the group for a given property. More... | |
virtual void | setPropertyOrdinal (const int &index, const std::string &value)=0 |
Set the value of a property by an index. More... | |
void | setPropertySettings (const std::string &name, std::unique_ptr< IPropertySettings > settings) |
virtual void | setPropertyValue (const std::string &name, const std::string &value)=0 |
Sets property value from a string. More... | |
virtual void | setPropertyValueFromJson (const std::string &name, const Json::Value &value)=0 |
Sets property value from a Json::Value. More... | |
virtual void | splitByTime (std::vector< SplittingInterval > &, std::vector< PropertyManager * >) const =0 |
virtual std::unique_ptr< Property > | takeProperty (const size_t index)=0 |
Removes the property from management and returns a pointer to it. More... | |
void | updatePropertyValues (const IPropertyManager &other) |
Update values of the existing properties. More... | |
virtual bool | validateProperties () const =0 |
Validates all the properties in the collection. More... | |
virtual | ~IPropertyManager ()=default |
Private Types | |
enum class | Supported { D17 , FIGARO } |
ID tags for supported instruments. More... | |
Private Member Functions | |
void | addSampleLogs () |
double | collimationAngle () const |
Return the incident neutron deflection angle. More... | |
void | convertTofToWavelength () |
Call child algorithm ConvertUnits for conversion from TOF to wavelength Note that DAN calibration is done in preprocess, since it needs information also from the direct beam so converting to wavelength in the loader will not be accurate. More... | |
double | detectorRotation () |
Compute the detector rotation angle around origin. More... | |
void | exec () override |
Execute the algorithm. More... | |
std::vector< double > | getXValues () |
Determine x values (unit time-of-flight) More... | |
void | init () override |
Initialize the algorithm's properties. More... | |
void | initNames (const NeXus::NXEntry &entry) |
Init names of sample logs based on instrument specific NeXus file entries. More... | |
void | initPixelWidth () |
Initialize m_pixelWidth from the IDF as the step of rectangular detector. More... | |
void | initWorkspace (const std::vector< std::vector< int > > &monitorsData) |
Creates the workspace and initialises member variables with the corresponding values. More... | |
void | loadData (const NeXus::NXEntry &entry, const std::vector< std::vector< int > > &monitorsData, const std::vector< double > &xVals) |
Load data from nexus file. More... | |
void | loadDataDetails (const NeXus::NXEntry &entry) |
Load Data details (number of tubes, channels, etc) More... | |
void | loadInstrument () |
Run the Child Algorithm LoadInstrument. More... | |
std::vector< std::vector< int > > | loadMonitors (const NeXus::NXEntry &entry) |
Load monitor data. More... | |
void | loadNexusEntriesIntoProperties () |
Use the LoadHelper utility to load most of the nexus entries into workspace sample log properties. More... | |
std::vector< int > | loadSingleMonitor (const NeXus::NXEntry &entry, const std::string &monitor_data) |
Load single monitor. More... | |
double | offsetAngle (const double peakCentre, const double detectorCentre, const double detectorDistance) const |
Calculate the offset angle between detector center and peak. More... | |
double | peakOffsetAngle () |
void | placeDetector () |
Update detector position according to data file. More... | |
void | placeSlits () |
Update the slit positions. More... | |
void | placeSource () |
Update source position. More... | |
double | reflectometryPeak () |
Gaussian fit to determine peak position if no user position given. More... | |
void | sampleAngle (const NeXus::NXEntry &entry) |
Sets the sample angle (i.e. More... | |
double | sampleDetectorDistance () const |
Return the sample to detector distance for the current instrument. More... | |
void | sampleHorizontalOffset () |
Return the horizontal offset along the z axis. More... | |
double | sourceSampleDistance () const |
Return the source to sample distance for the current instrument. More... | |
Private Attributes | |
size_t | m_acqMode {1} |
double | m_channelWidth {0.0} |
std::string | m_chopper1Name |
std::string | m_chopper2Name |
double | m_detectorDistance {0.0} |
Supported | m_instrument {Supported::D17} |
API::MatrixWorkspace_sptr | m_localWorkspace |
size_t | m_numberOfChannels {0} |
(1: TOF (default), 0: monochromatic) More... | |
size_t | m_numberOfHistograms {0} |
std::string | m_offsetFrom |
double | m_pixelWidth {0.0} |
double | m_sampleAngle {0.0} |
std::string | m_sampleAngleName |
double | m_sampleZOffset {0.0} |
double | m_sourceDistance {0.0} |
Mantid::Types::Core::DateAndTime | m_startTime |
double | m_tofDelay {0.0} |
Additional Inherited Members | |
Public Types inherited from Mantid::API::Algorithm | |
using | WorkspaceVector = std::vector< std::shared_ptr< Workspace > > |
Static Public Member Functions inherited from Mantid::API::Algorithm | |
static IAlgorithm_sptr | fromString (const std::string &input) |
De-serialize an object from a string. More... | |
static IAlgorithm_sptr | fromJson (const Json::Value &input) |
De-serialize an object from a Json. More... | |
static IAlgorithm_sptr | fromHistory (const AlgorithmHistory &history) |
Construct an object from a history entry. More... | |
Public Attributes inherited from Mantid::API::Algorithm | |
bool | calledByAlias = false |
Flag to indicate if the algorithm is called by its alias. More... | |
Protected Member Functions inherited from Mantid::API::ParallelAlgorithm | |
Parallel::ExecutionMode | getParallelExecutionMode (const std::map< std::string, Parallel::StorageMode > &storageModes) const override |
Get correct execution mode based on input storage modes for an MPI run. More... | |
~ParallelAlgorithm ()=default | |
Protected Member Functions inherited from Mantid::API::Algorithm | |
void | exec (Parallel::ExecutionMode executionMode) |
Runs the algorithm with the specified execution mode. More... | |
virtual void | execDistributed () |
Runs the algorithm in distributed execution mode. More... | |
virtual void | execMasterOnly () |
Runs the algorithm in master-only execution mode. More... | |
virtual const std::string | workspaceMethodOnTypes () const |
Returns a semi-colon separated list of workspace types to attach this algorithm. More... | |
void | cacheWorkspaceProperties () |
Go through the properties and cache the input/output workspace properties for later use. More... | |
void | cacheInputWorkspaceHistories () |
Cache the histories of any input workspaces so they can be copied over after algorithm completion. More... | |
void | setExecutionState (const ExecutionState state) |
Sets the current execution state. More... | |
void | setResultState (const ResultState state) |
Sets the result execution state. More... | |
void | store () |
Stores any output workspaces into the AnalysisDataService. More... | |
void | progress (double p, const std::string &msg="", double estimatedTime=0.0, int progressPrecision=0) |
Sends ProgressNotification. More... | |
void | interruption_point () |
This is called during long-running operations, and check if the algorithm has requested that it be cancelled. More... | |
Poco::NotificationCenter & | notificationCenter () const |
Return a reference to the algorithm's notification dispatcher. More... | |
void | handleChildProgressNotification (const Poco::AutoPtr< ProgressNotification > &pNf) |
Observation slot for child algorithm progress notification messages, these are scaled and then signalled for this algorithm. More... | |
const Poco::AbstractObserver & | progressObserver () const |
Return a reference to the algorithm's object that is reporting progress. More... | |
bool | isWorkspaceProperty (const Kernel::Property *const prop) const |
checks the property is a workspace property More... | |
bool | trackingHistory () |
get whether we are tracking the history for this algorithm, More... | |
virtual void | fillHistory () |
Copy workspace history for input workspaces to output workspaces and record the history for ths algorithm. More... | |
virtual void | setOtherProperties (IAlgorithm *alg, const std::string &propertyName, const std::string &propertyValue, int periodNum) |
Virtual method to set the non workspace properties for this algorithm. More... | |
template<typename T , const int AllowedIndexTypes = static_cast<int>(IndexType::WorkspaceIndex), typename... WSPropArgs, typename = typename std::enable_if<std::is_convertible<T *, MatrixWorkspace *>::value>::type> | |
void | declareWorkspaceInputProperties (const std::string &propertyName, const std::string &doc, WSPropArgs &&...wsPropArgs) |
Protected Member Functions inherited from Mantid::Kernel::IPropertyManager | |
virtual void | afterPropertySet (const std::string &) |
Override this method to perform a custom action right after a property was set. More... | |
virtual void | clear ()=0 |
Clears all properties under management. More... | |
virtual Property * | getPointerToPropertyOrdinal (const int &index) const =0 |
Get a property by an index. More... | |
template<typename T > | |
T | getValue (const std::string &name) const |
Templated method to get the value of a property. More... | |
template<> | |
MANTID_KERNEL_DLL PropertyManager_sptr | getValue (const std::string &name) const |
template<> | |
MANTID_KERNEL_DLL PropertyManager_const_sptr | getValue (const std::string &name) const |
Static Protected Member Functions inherited from Mantid::API::Algorithm | |
template<typename NumT > | |
static bool | isEmpty (const NumT toCheck) |
checks that the value was not set by users, uses the value in empty double/int. More... | |
Protected Attributes inherited from Mantid::API::Algorithm | |
std::atomic< bool > | m_cancel |
Set to true to stop execution. More... | |
std::atomic< bool > | m_parallelException |
Set if an exception is thrown, and not caught, within a parallel region. More... | |
std::vector< IWorkspaceProperty * > | m_inputWorkspaceProps |
All the WorkspaceProperties that are Input or InOut. Set in execute() More... | |
std::shared_ptr< AlgorithmHistory > | m_history |
Pointer to the history for the algorithm being executed. More... | |
Kernel::Logger | m_log |
Logger for this algorithm. More... | |
Kernel::Logger & | g_log |
std::shared_ptr< AlgorithmHistory > | m_parentHistory |
Pointer to the parent history object (if set) More... | |
std::vector< WorkspaceVector > | m_unrolledInputWorkspaces |
One vector of workspaces for each input workspace property. More... | |
size_t | m_groupSize |
Size of the group(s) being processed. More... | |
bool | m_usingBaseProcessGroups = false |
distinguish between base processGroups() and overriden/algorithm specific versions More... | |
Static Protected Attributes inherited from Mantid::API::Algorithm | |
static size_t | g_execCount = 0 |
Counter to keep track of algorithm execution order. More... | |
LoadILLReflectometry : Loads an ILL reflectometry Nexus data file.
Definition at line 21 of file LoadILLReflectometry.h.
|
strongprivate |
ID tags for supported instruments.
Enumerator | |
---|---|
D17 | |
FIGARO |
Definition at line 42 of file LoadILLReflectometry.h.
|
default |
|
private |
|
inlineoverridevirtual |
Algorithm's category for search and find.
Reimplemented from Mantid::API::Algorithm.
Definition at line 32 of file LoadILLReflectometry.h.
|
private |
Return the incident neutron deflection angle.
Definition at line 771 of file LoadILLReflectometry.cpp.
References doubleFromRun(), FIGARO, m_instrument, and m_sampleAngleName.
|
overridevirtual |
Returns a confidence value that this algorithm can load a file.
Return the confidence with this algorithm can load the file.
descriptor | A descriptor for the file |
Implements Mantid::API::IFileLoader< Kernel::NexusDescriptor >.
Definition at line 158 of file LoadILLReflectometry.cpp.
|
private |
Call child algorithm ConvertUnits for conversion from TOF to wavelength Note that DAN calibration is done in preprocess, since it needs information also from the direct beam so converting to wavelength in the loader will not be accurate.
Definition at line 282 of file LoadILLReflectometry.cpp.
References Mantid::API::Algorithm::createChildAlgorithm(), Mantid::API::Algorithm::getPropertyValue(), m_acqMode, and m_localWorkspace.
Referenced by exec().
|
private |
Compute the detector rotation angle around origin.
Definition at line 645 of file LoadILLReflectometry.cpp.
References Mantid::API::g_log, Mantid::API::Algorithm::getProperty(), Mantid::API::Algorithm::getPropertyValue(), Mantid::API::Algorithm::isDefault(), m_detectorDistance, m_localWorkspace, m_sampleAngle, offsetAngle(), reflectometryPeak(), and Mantid::Kernel::Logger::warning().
Referenced by placeDetector().
double Mantid::DataHandling::LoadILLReflectometry::doubleFromRun | ( | const std::string & | entryName | ) | const |
LoadILLReflectometry::doubleFromRun Returns a sample log a single double.
entryName | : the name of the log |
runtime_error | : if the log does not exist |
Definition at line 348 of file LoadILLReflectometry.cpp.
References m_localWorkspace.
Referenced by collimationAngle(), getXValues(), placeSlits(), sampleDetectorDistance(), sampleHorizontalOffset(), and sourceSampleDistance().
|
overrideprivatevirtual |
Execute the algorithm.
Implements Mantid::API::Algorithm.
Definition at line 201 of file LoadILLReflectometry.cpp.
References Mantid::NeXus::NXClass::close(), convertTofToWavelength(), Mantid::API::Algorithm::getPropertyValue(), getXValues(), initNames(), initPixelWidth(), initWorkspace(), loadData(), loadDataDetails(), loadInstrument(), loadMonitors(), loadNexusEntriesIntoProperties(), m_localWorkspace, Mantid::NeXus::NXRoot::openFirstEntry(), placeDetector(), placeSlits(), placeSource(), sampleAngle(), sampleHorizontalOffset(), and Mantid::Kernel::IPropertyManager::setProperty().
|
private |
Determine x values (unit time-of-flight)
Definition at line 390 of file LoadILLReflectometry.cpp.
References D17, Mantid::Kernel::Logger::debug(), doubleFromRun(), Mantid::Kernel::Logger::error(), FIGARO, Mantid::API::g_log, m_acqMode, m_channelWidth, m_chopper1Name, m_chopper2Name, m_instrument, m_localWorkspace, m_numberOfChannels, m_offsetFrom, m_tofDelay, and Mantid::Kernel::Logger::warning().
Referenced by exec().
|
overrideprivatevirtual |
Initialize the algorithm's properties.
Implements Mantid::API::Algorithm.
Definition at line 173 of file LoadILLReflectometry.cpp.
References Mantid::API::Algorithm::declareProperty(), Mantid::EMPTY_DBL(), Mantid::Kernel::Direction::Input, Mantid::API::FileProperty::Load, and Mantid::Kernel::Direction::Output.
|
private |
Init names of sample logs based on instrument specific NeXus file entries.
entry | :: the NeXus file entry |
Definition at line 239 of file LoadILLReflectometry.cpp.
References D17, Mantid::Kernel::Logger::debug(), FIGARO, Mantid::DataHandling::LoadHelper::findInstrumentNexusPath(), Mantid::API::g_log, Mantid::NeXus::NXClass::getString(), Mantid::NeXus::NXDataSetTyped< T >::load(), m_acqMode, m_chopper1Name, m_chopper2Name, m_instrument, m_offsetFrom, m_sampleAngleName, Mantid::NeXus::NXClass::openNXInt(), and std::to_string().
Referenced by exec().
|
private |
Initialize m_pixelWidth from the IDF as the step of rectangular detector.
Definition at line 692 of file LoadILLReflectometry.cpp.
References D17, m_instrument, m_localWorkspace, and m_pixelWidth.
Referenced by exec().
|
private |
Creates the workspace and initialises member variables with the corresponding values.
monitorsData | :: Monitors data already loaded |
Definition at line 299 of file LoadILLReflectometry.cpp.
References Mantid::Kernel::Logger::debug(), Mantid::API::g_log, Mantid::Kernel::SingletonHolder< T >::Instance(), m_acqMode, m_localWorkspace, m_numberOfChannels, m_numberOfHistograms, and m_startTime.
Referenced by exec().
|
private |
Load data from nexus file.
entry | :: The Nexus file entry |
monitorsData | :: Monitors data already loaded |
xVals | :: X values |
Definition at line 504 of file LoadILLReflectometry.cpp.
References Mantid::NeXus::NXDataSetTyped< T >::load(), m_localWorkspace, m_numberOfChannels, m_numberOfHistograms, Mantid::NeXus::NXData::openIntData(), Mantid::NeXus::NXEntry::openNXData(), PARALLEL_FOR_IF, Mantid::API::Algorithm::progress(), and Mantid::Kernel::threadSafe().
Referenced by exec().
|
private |
Load Data details (number of tubes, channels, etc)
entry | First entry of nexus file |
Definition at line 323 of file LoadILLReflectometry.cpp.
References Mantid::DataHandling::LoadHelper::dateTimeInIsoFormat(), Mantid::NeXus::NXClass::getString(), Mantid::NeXus::NXDataSetTyped< T >::load(), m_acqMode, m_channelWidth, m_numberOfChannels, m_numberOfHistograms, m_startTime, m_tofDelay, Mantid::NeXus::NXClass::openNXFloat(), and Mantid::NeXus::NXClass::openNXInt().
Referenced by exec().
|
private |
Run the Child Algorithm LoadInstrument.
Definition at line 224 of file LoadILLReflectometry.cpp.
References Mantid::API::Algorithm::createChildAlgorithm(), D17, m_instrument, and m_localWorkspace.
Referenced by exec().
|
private |
Load monitor data.
entry | :: The Nexus entry |
Definition at line 377 of file LoadILLReflectometry.cpp.
References Mantid::Kernel::Logger::debug(), Mantid::API::g_log, and loadSingleMonitor().
Referenced by exec().
|
private |
Use the LoadHelper utility to load most of the nexus entries into workspace sample log properties.
Definition at line 536 of file LoadILLReflectometry.cpp.
References Mantid::DataHandling::LoadHelper::addNexusFieldsToWsRun(), FIGARO, Mantid::API::Algorithm::getPropertyValue(), m_instrument, and m_localWorkspace.
Referenced by exec().
|
private |
Load single monitor.
entry | :: The Nexus entry |
monitor_data | :: A std::string containing the Nexus path to the monitor data |
Definition at line 364 of file LoadILLReflectometry.cpp.
References Mantid::NeXus::NXDataSetTyped< T >::load(), Mantid::NeXus::NXData::openIntData(), Mantid::NeXus::NXEntry::openNXData(), and Mantid::NeXus::NXDataSetTyped< T >::size().
Referenced by loadMonitors().
|
inlineoverridevirtual |
Algorithm's name for identification.
Implements Mantid::API::Algorithm.
Definition at line 27 of file LoadILLReflectometry.h.
|
private |
Calculate the offset angle between detector center and peak.
peakCentre | peak centre in pixels. |
detectorCentre | detector centre in pixels. |
detectorDistance | detector-sample distance in meters. |
Definition at line 781 of file LoadILLReflectometry.cpp.
References FIGARO, m_instrument, and m_pixelWidth.
Referenced by detectorRotation().
|
private |
|
private |
Update detector position according to data file.
Definition at line 707 of file LoadILLReflectometry.cpp.
References D17, detectorRotation(), m_detectorDistance, m_instrument, m_localWorkspace, Mantid::DataHandling::LoadHelper::moveComponent(), Mantid::DataHandling::LoadHelper::rotateComponent(), rotation, and sampleDetectorDistance().
Referenced by exec().
|
private |
Update the slit positions.
Definition at line 721 of file LoadILLReflectometry.cpp.
References doubleFromRun(), FIGARO, m_instrument, m_localWorkspace, m_sampleAngleName, m_sampleZOffset, and Mantid::DataHandling::LoadHelper::moveComponent().
Referenced by exec().
|
private |
Update source position.
Definition at line 763 of file LoadILLReflectometry.cpp.
References m_localWorkspace, m_sourceDistance, Mantid::DataHandling::LoadHelper::moveComponent(), and sourceSampleDistance().
Referenced by exec().
|
private |
Gaussian fit to determine peak position if no user position given.
Definition at line 559 of file LoadILLReflectometry.cpp.
References Mantid::API::Algorithm::createChildAlgorithm(), Mantid::API::g_log, Mantid::API::Algorithm::getProperty(), height, Mantid::Kernel::SingletonHolder< T >::Instance(), Mantid::API::Algorithm::isDefault(), m_detectorDistance, m_localWorkspace, m_sourceDistance, Mantid::Kernel::Logger::warning(), and Mantid::Geometry::x.
Referenced by detectorRotation().
|
private |
Sets the sample angle (i.e.
bragg angle) [degrees] Used when measurement type is reflected beam (otherwise must be zero) Note that DAN calibration needs information also from the corresponding direct beam, hence it cannot be done in the loader, but it is done in preprocessing algorithm. However loader should still support loading reflected beams standalone, hence sample angle is the only option if BraggAngle is not manually specified.
Definition at line 671 of file LoadILLReflectometry.cpp.
References D17, Mantid::NeXus::NXClass::isValid(), Mantid::NeXus::NXDataSetTyped< T >::load(), m_instrument, m_sampleAngle, and Mantid::NeXus::NXClass::openNXFloat().
Referenced by exec().
|
private |
Return the sample to detector distance for the current instrument.
Definition at line 793 of file LoadILLReflectometry.cpp.
References D17, doubleFromRun(), and m_instrument.
Referenced by placeDetector().
|
private |
Return the horizontal offset along the z axis.
Definition at line 804 of file LoadILLReflectometry.cpp.
References doubleFromRun(), FIGARO, m_instrument, m_localWorkspace, and m_sampleZOffset.
Referenced by exec().
|
inlineoverridevirtual |
Function to return all of the seeAlso (these are not validated) algorithms related to this algorithm.A default implementation is provided.
Reimplemented from Mantid::API::Algorithm.
Definition at line 30 of file LoadILLReflectometry.h.
|
private |
Return the source to sample distance for the current instrument.
Definition at line 826 of file LoadILLReflectometry.cpp.
References D17, doubleFromRun(), m_instrument, m_localWorkspace, m_sampleAngleName, and m_sampleZOffset.
Referenced by placeSource().
|
inlineoverridevirtual |
Algorithm's summary.
Implements Mantid::API::Algorithm.
Definition at line 34 of file LoadILLReflectometry.h.
|
inlineoverridevirtual |
Algorithm's version for identification.
Implements Mantid::API::Algorithm.
Definition at line 29 of file LoadILLReflectometry.h.
|
private |
Definition at line 71 of file LoadILLReflectometry.h.
Referenced by convertTofToWavelength(), getXValues(), initNames(), initWorkspace(), and loadDataDetails().
|
private |
Definition at line 79 of file LoadILLReflectometry.h.
Referenced by getXValues(), and loadDataDetails().
|
private |
Definition at line 76 of file LoadILLReflectometry.h.
Referenced by getXValues(), and initNames().
|
private |
Definition at line 77 of file LoadILLReflectometry.h.
Referenced by getXValues(), and initNames().
|
private |
Definition at line 80 of file LoadILLReflectometry.h.
Referenced by detectorRotation(), placeDetector(), and reflectometryPeak().
|
private |
Definition at line 70 of file LoadILLReflectometry.h.
Referenced by collimationAngle(), getXValues(), initNames(), initPixelWidth(), loadInstrument(), loadNexusEntriesIntoProperties(), offsetAngle(), placeDetector(), placeSlits(), sampleAngle(), sampleDetectorDistance(), sampleHorizontalOffset(), and sourceSampleDistance().
|
private |
Definition at line 86 of file LoadILLReflectometry.h.
Referenced by convertTofToWavelength(), detectorRotation(), doubleFromRun(), exec(), getXValues(), initPixelWidth(), initWorkspace(), loadData(), loadInstrument(), loadNexusEntriesIntoProperties(), placeDetector(), placeSlits(), placeSource(), reflectometryPeak(), sampleHorizontalOffset(), and sourceSampleDistance().
|
private |
(1: TOF (default), 0: monochromatic)
Definition at line 72 of file LoadILLReflectometry.h.
Referenced by getXValues(), initWorkspace(), loadData(), and loadDataDetails().
|
private |
Definition at line 73 of file LoadILLReflectometry.h.
Referenced by initWorkspace(), loadData(), and loadDataDetails().
|
private |
Definition at line 75 of file LoadILLReflectometry.h.
Referenced by getXValues(), and initNames().
|
private |
Definition at line 81 of file LoadILLReflectometry.h.
Referenced by initPixelWidth(), and offsetAngle().
|
private |
Definition at line 84 of file LoadILLReflectometry.h.
Referenced by detectorRotation(), and sampleAngle().
|
private |
Definition at line 74 of file LoadILLReflectometry.h.
Referenced by collimationAngle(), initNames(), placeSlits(), and sourceSampleDistance().
|
private |
Definition at line 82 of file LoadILLReflectometry.h.
Referenced by placeSlits(), sampleHorizontalOffset(), and sourceSampleDistance().
|
private |
Definition at line 83 of file LoadILLReflectometry.h.
Referenced by placeSource(), and reflectometryPeak().
|
private |
Definition at line 85 of file LoadILLReflectometry.h.
Referenced by initWorkspace(), and loadDataDetails().
|
private |
Definition at line 78 of file LoadILLReflectometry.h.
Referenced by getXValues(), and loadDataDetails().