Mantid
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#include <VesuvioCalculateGammaBackground.h>
Classes | |
struct | FoilInfo |
Hold information about a single foil. More... | |
Public Member Functions | |
const std::string | category () const override |
function to return a category of the algorithm. More... | |
const std::string | name () const override |
function to return a name of the algorithm, must be overridden in all algorithms More... | |
const std::vector< std::string > | seeAlso () const override |
Function to return all of the seeAlso (these are not validated) algorithms related to this algorithm.A default implementation is provided. More... | |
const std::string | summary () const override |
Summary of algorithms purpose. More... | |
int | version () const override |
function to return a version of the algorithm, must be overridden in all algorithms More... | |
VesuvioCalculateGammaBackground () | |
Default constructor. More... | |
~VesuvioCalculateGammaBackground () override | |
Destructor. More... | |
Public Member Functions inherited from Mantid::API::Algorithm | |
Algorithm () | |
Constructor. More... | |
Algorithm (const Algorithm &)=delete | |
Algorithm & | operator= (const Algorithm &)=delete |
~Algorithm () override | |
Virtual destructor. More... | |
void | initialize () override |
Initialization method invoked by the framework. More... | |
bool | execute () override final |
The actions to be performed by the algorithm on a dataset. More... | |
void | addTimer (const std::string &name, const Kernel::time_point_ns &begin, const Kernel::time_point_ns &end) |
void | executeAsChildAlg () override |
Execute as a Child Algorithm. More... | |
std::map< std::string, std::string > | validateInputs () override |
Perform validation of ALL the input properties of the algorithm. More... | |
ExecutionState | executionState () const override |
Gets the current execution state. More... | |
ResultState | resultState () const override |
Gets the current result State. More... | |
bool | isInitialized () const override |
Has the Algorithm already been initialized. More... | |
bool | isExecuted () const override |
Has the Algorithm already been executed successfully. More... | |
bool | isRunning () const override |
True if the algorithm is running. More... | |
bool | isReadyForGarbageCollection () const override |
True if the algorithm is ready for garbage collection. More... | |
bool | isChild () const override |
To query whether algorithm is a child. More... | |
void | setChild (const bool isChild) override |
To set whether algorithm is a child. More... | |
void | enableHistoryRecordingForChild (const bool on) override |
Change the state of the history recording flag. More... | |
bool | isRecordingHistoryForChild () |
void | setAlwaysStoreInADS (const bool doStore) override |
Do we ALWAYS store in the AnalysisDataService? This is set to true for python algorithms' child algorithms. More... | |
bool | getAlwaysStoreInADS () const override |
Returns true if we always store in the AnalysisDataService. More... | |
void | setRethrows (const bool rethrow) override |
Set whether the algorithm will rethrow exceptions. More... | |
Poco::ActiveResult< bool > | executeAsync () override |
Asynchronous execution. More... | |
void | addObserver (const Poco::AbstractObserver &observer) const override |
Add an observer for a notification. More... | |
void | removeObserver (const Poco::AbstractObserver &observer) const override |
Remove an observer. More... | |
void | cancel () override |
Raises the cancel flag. More... | |
bool | getCancel () const |
Returns the cancellation state. More... | |
Kernel::Logger & | getLogger () const |
Returns a reference to the logger. More... | |
void | setLogging (const bool value) override |
Logging can be disabled by passing a value of false. More... | |
bool | isLogging () const override |
returns the status of logging, True = enabled More... | |
void | setLoggingOffset (const int value) override |
gets the logging priority offset More... | |
int | getLoggingOffset () const override |
returns the logging priority offset More... | |
void | setAlgStartupLogging (const bool enabled) override |
disable Logging of start and end messages More... | |
bool | getAlgStartupLogging () const override |
get the state of Logging of start and end messages More... | |
void | setChildStartProgress (const double startProgress) const override |
setting the child start progress More... | |
void | setChildEndProgress (const double endProgress) const override |
setting the child end progress More... | |
std::string | toString () const override |
Serialize an object to a string. More... | |
::Json::Value | toJson () const override |
Serialize an object to a json object. More... | |
virtual std::shared_ptr< Algorithm > | createChildAlgorithm (const std::string &name, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true, const int &version=-1) |
Create a Child Algorithm. More... | |
void | setupAsChildAlgorithm (const Algorithm_sptr &algorithm, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true) |
Setup algorithm as child algorithm. More... | |
void | trackAlgorithmHistory (std::shared_ptr< AlgorithmHistory > parentHist) |
set whether we wish to track the child algorithm's history and pass it the parent object to fill. More... | |
void | findWorkspaces (WorkspaceVector &workspaces, unsigned int direction, bool checkADS=false) const |
Populate lists of the workspace properties for a given direction (InOut workspaces are included in both input/output) More... | |
virtual bool | checkGroups () |
Check the input workspace properties for groups. More... | |
virtual bool | processGroups () |
Process WorkspaceGroup inputs. More... | |
void | copyNonWorkspaceProperties (IAlgorithm *alg, int periodNum) |
Copy all the non-workspace properties from this to alg. More... | |
const Parallel::Communicator & | communicator () const |
Returns a const reference to the (MPI) communicator of the algorithm. More... | |
void | setCommunicator (const Parallel::Communicator &communicator) |
Sets the (MPI) communicator of the algorithm. More... | |
void | declareProperty (std::unique_ptr< Kernel::Property > p, const std::string &doc="") override |
Add a property to the list of managed properties. More... | |
void | declareOrReplaceProperty (std::unique_ptr< Kernel::Property > p, const std::string &doc="") override |
Add or replace property in the list of managed properties. More... | |
void | resetProperties () override |
Reset property values back to initial values (blank or default values) More... | |
void | setProperties (const std::string &propertiesJson, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false) override |
Set the ordered list of properties by one string of values, separated by semicolons. More... | |
void | setProperties (const ::Json::Value &jsonValue, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false) override |
Sets all the declared properties from a json object. More... | |
void | setPropertiesWithString (const std::string &propertiesString, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >()) override |
Sets all the declared properties from a string. More... | |
void | setPropertyValue (const std::string &name, const std::string &value) override |
Set the value of a property by string N.B. More... | |
void | setPropertyValueFromJson (const std::string &name, const Json::Value &value) override |
Set the value of a property by Json::Value object. More... | |
void | setPropertyOrdinal (const int &index, const std::string &value) override |
Set the value of a property by an index N.B. More... | |
virtual void | copyPropertiesFrom (const Algorithm &alg) |
Make m_properties point to the same PropertyManager as alg.m_properties. More... | |
bool | existsProperty (const std::string &name) const override |
Checks whether the named property is already in the list of managed property. More... | |
bool | validateProperties () const override |
Validates all the properties in the collection. More... | |
size_t | propertyCount () const override |
Count the number of properties under management. More... | |
std::string | getPropertyValue (const std::string &name) const override |
Get the value of a property as a string. More... | |
const std::vector< Kernel::Property * > & | getProperties () const override |
Get the list of managed properties. More... | |
std::vector< std::string > | getDeclaredPropertyNames () const noexcept override |
Return the list of declared property names. More... | |
TypedValue | getProperty (const std::string &name) const override |
Get the value of a property. More... | |
std::string | asString (bool withDefaultValues=false) const override |
Return the property manager serialized as a string. More... | |
::Json::Value | asJson (bool withDefaultValues=false) const override |
Return the property manager serialized as a json object. More... | |
bool | isDefault (const std::string &name) const |
void | removeProperty (const std::string &name, const bool delproperty=true) override |
Removes the property from management. More... | |
std::unique_ptr< Kernel::Property > | takeProperty (const size_t index) override |
Removes the property from management and returns a pointer to it. More... | |
void | clear () override |
Clears all properties under management. More... | |
void | afterPropertySet (const std::string &) override |
Override this method to perform a custom action right after a property was set. More... | |
void | filterByTime (const Types::Core::DateAndTime &, const Types::Core::DateAndTime &) override |
void | splitByTime (std::vector< Kernel::SplittingInterval > &, std::vector< Kernel::PropertyManager * >) const override |
void | filterByProperty (const Kernel::TimeSeriesProperty< bool > &, const std::vector< std::string > &) override |
Kernel::Property * | getPointerToProperty (const std::string &name) const override |
Get a property by name. More... | |
Kernel::Property * | getPointerToPropertyOrdinal (const int &index) const override |
Get a property by an index. More... | |
virtual void | declareProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc="", const unsigned int direction=Direction::Input) |
Add a property of the template type to the list of managed properties. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const std::string &doc, const unsigned int direction=Direction::Input) |
Add a property to the list of managed properties with no validator. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const unsigned int direction) |
Add a property of the template type to the list of managed properties. More... | |
void | declareProperty (const std::string &name, const char *value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc=std::string(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const std::string &doc, IValidator_sptr validator=std::make_shared< NullValidator >(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const unsigned int direction) |
Add a property of string type to the list of managed properties. More... | |
const std::vector< std::string > | categories () const override |
Function to return all of the categories that contain this algorithm. More... | |
const std::string | categorySeparator () const override |
Function to return the separator token for the category string. More... | |
const std::string | alias () const override |
function to return any aliases to the algorithm; A default implementation is provided More... | |
const std::string | aliasDeprecated () const override |
Expiration date (in ISO8601 format) for the algorithm aliases; default implementation for no expiration date. More... | |
const std::string | helpURL () const override |
function to return URL for algorithm documentation; A default implementation is provided. More... | |
template<typename T , typename = typename std::enable_if<std::is_convertible<T *, MatrixWorkspace *>::value>::type> | |
std::tuple< std::shared_ptr< T >, Indexing::SpectrumIndexSet > | getWorkspaceAndIndices (const std::string &name) const |
template<typename T1 , typename T2 , typename = typename std::enable_if<std::is_convertible<T1 *, MatrixWorkspace *>::value>::type, typename = typename std::enable_if<std::is_convertible<T2 *, std::string *>::value || std::is_convertible<T2 *, std::vector<int64_t> *>::value>::type> | |
void | setWorkspaceInputProperties (const std::string &name, const std::shared_ptr< T1 > &wksp, IndexType type, const T2 &list) |
template<typename T1 , typename T2 , typename = typename std::enable_if<std::is_convertible<T1 *, MatrixWorkspace *>::value>::type, typename = typename std::enable_if<std::is_convertible<T2 *, std::string *>::value || std::is_convertible<T2 *, std::vector<int64_t> *>::value>::type> | |
void | setWorkspaceInputProperties (const std::string &name, const std::string &wsName, IndexType type, const T2 &list) |
const std::string | workspaceMethodName () const override |
const std::vector< std::string > | workspaceMethodOn () const override |
const std::string | workspaceMethodInputProperty () const override |
AlgorithmID | getAlgorithmID () const override |
Algorithm ID. More... | |
virtual void | addObserver (const Poco::AbstractObserver &observer) const =0 |
Add an observer for a notification. More... | |
virtual const std::string | alias () const =0 |
function to return any aliases of the algorithm. More... | |
virtual const std::string | aliasDeprecated () const =0 |
Expiration date (in ISO8601 format) for the algorithm aliases. Empty if no expiration date. More... | |
virtual void | cancel ()=0 |
Raises the cancel flag. More... | |
virtual const std::vector< std::string > | categories () const =0 |
Function to return all of the categories that contain this algorithm. More... | |
virtual const std::string | category () const =0 |
function to return a category of the algorithm. More... | |
virtual const std::string | categorySeparator () const =0 |
Function to return the separator token for the category string. More... | |
virtual void | enableHistoryRecordingForChild (const bool on)=0 |
If true history will be recorded for a child. More... | |
virtual bool | execute ()=0 |
System execution. More... | |
virtual void | executeAsChildAlg ()=0 |
Execute as a Child Algorithm, with try/catch. More... | |
virtual Poco::ActiveResult< bool > | executeAsync ()=0 |
Asynchronous execution of the algorithm. More... | |
virtual ExecutionState | executionState () const =0 |
Gets the current execution state. More... | |
virtual AlgorithmID | getAlgorithmID () const =0 |
Algorithm ID. More... | |
virtual bool | getAlgStartupLogging () const =0 |
get the state of Logging of start and end messages More... | |
virtual bool | getAlwaysStoreInADS () const =0 |
To query whether the output is stored in the analysis data service. More... | |
virtual int | getLoggingOffset () const =0 |
returns the logging priority offset More... | |
virtual const std::string | helpURL () const =0 |
function to return an optional URL for documentation. More... | |
virtual void | initialize ()=0 |
Initialization method invoked by the framework. More... | |
virtual bool | isChild () const =0 |
To query whether algorithm is a child. Default to false. More... | |
virtual bool | isExecuted () const =0 |
Check whether the algorithm has been executed sucessfully. More... | |
virtual bool | isInitialized () const =0 |
Check whether the algorithm is initialized properly. More... | |
virtual bool | isLogging () const =0 |
returns the status of logging, True = enabled More... | |
virtual bool | isReadyForGarbageCollection () const =0 |
True if the algorithm is ready for garbage collection. More... | |
virtual bool | isRunning () const =0 |
True if the algorithm is running. More... | |
virtual const std::string | name () const =0 |
function to return a name of the algorithm, must be overridden in all algorithms More... | |
virtual void | removeObserver (const Poco::AbstractObserver &observer) const =0 |
Remove an observer. More... | |
virtual ResultState | resultState () const =0 |
Gets the currnet result State. More... | |
virtual const std::vector< std::string > | seeAlso () const =0 |
Function to return all of the seeAlso algorithms related to this algorithm. More... | |
virtual void | setAlgStartupLogging (const bool enabled)=0 |
disable Logging of start and end messages More... | |
virtual void | setAlwaysStoreInADS (const bool doStore)=0 |
Set whether we always store the output in the analysis data service. More... | |
virtual void | setChild (const bool isChild)=0 |
To set whether algorithm is a child. More... | |
virtual void | setChildEndProgress (const double endProgress) const =0 |
setting the child end progress More... | |
virtual void | setChildStartProgress (const double startProgress) const =0 |
setting the child start progress More... | |
virtual void | setLogging (const bool value)=0 |
Logging can be disabled by passing a value of false. More... | |
virtual void | setLoggingOffset (const int value)=0 |
gets the logging priority offset More... | |
virtual void | setRethrows (const bool rethrow)=0 |
To query whether an algorithm should rethrow exceptions when executing. More... | |
virtual const std::string | summary () const =0 |
function returns a summary message that will be displayed in the default GUI, and in the help. More... | |
virtual ::Json::Value | toJson () const =0 |
Serialize an algorithm as Json. More... | |
virtual std::string | toString () const =0 |
Serialize an algorithm. More... | |
virtual std::map< std::string, std::string > | validateInputs ()=0 |
Method checking errors on ALL the inputs, before execution. More... | |
virtual int | version () const =0 |
function to return a version of the algorithm, must be overridden in all algorithms More... | |
Algorithms As Methods | |
Public Member Functions inherited from Mantid::Kernel::IPropertyManager | |
virtual ::Json::Value | asJson (bool withDefaultValues=false) const =0 |
Return the property manager serialized as a json object. More... | |
virtual std::string | asString (bool withDefaultValues=false) const =0 |
Return the property manager serialized as a string. More... | |
virtual void | declareOrReplaceProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
void | declareProperty (const std::string &name, const char *value, const std::string &doc, IValidator_sptr validator=std::make_shared< NullValidator >(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
void | declareProperty (const std::string &name, const char *value, const unsigned int direction) |
Add a property of string type to the list of managed properties. More... | |
void | declareProperty (const std::string &name, const char *value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc=std::string(), const unsigned int direction=Direction::Input) |
Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const std::string &doc, const unsigned int direction=Direction::Input) |
Add a property to the list of managed properties with no validator. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, const unsigned int direction) |
Add a property of the template type to the list of managed properties. More... | |
template<typename T > | |
void | declareProperty (const std::string &name, T value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc="", const unsigned int direction=Direction::Input) |
Add a property of the template type to the list of managed properties. More... | |
virtual void | declareProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
Function to declare properties (i.e. store them) More... | |
virtual bool | existsProperty (const std::string &name) const =0 |
Checks whether the named property is already in the list of managed property. More... | |
virtual void | filterByProperty (const TimeSeriesProperty< bool > &, const std::vector< std::string > &)=0 |
virtual void | filterByTime (const Types::Core::DateAndTime &, const Types::Core::DateAndTime &)=0 |
virtual std::vector< std::string > | getDeclaredPropertyNames () const noexcept=0 |
Get the list of managed property names. More... | |
virtual Property * | getPointerToProperty (const std::string &name) const =0 |
Get a pointer to property by name. More... | |
virtual const std::vector< Property * > & | getProperties () const =0 |
Get the list of managed properties. More... | |
std::vector< Property * > | getPropertiesInGroup (const std::string &group) const |
Get the list of managed properties in a given group. More... | |
virtual TypedValue | getProperty (const std::string &name) const =0 |
Get the value of a property. More... | |
virtual std::string | getPropertyValue (const std::string &name) const =0 |
Get the value of a property as a string. More... | |
virtual size_t | propertyCount () const =0 |
Returns the number of properties under management. More... | |
virtual void | removeProperty (const std::string &name, const bool delproperty=true)=0 |
Removes the property from management. More... | |
virtual void | resetProperties ()=0 |
virtual void | setProperties (const ::Json::Value &jsonValue, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false)=0 |
Sets all the properties from a json object. More... | |
virtual void | setProperties (const std::string &propertiesJson, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false)=0 |
Sets all properties from a string. More... | |
virtual void | setPropertiesWithString (const std::string &propertiesString, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >())=0 |
Sets all the declared properties from a string. More... | |
IPropertyManager * | setProperty (const std::string &name, const char *value) |
Specialised version of setProperty template method to handle const char *. More... | |
IPropertyManager * | setProperty (const std::string &name, const std::string &value) |
Specialised version of setProperty template method to handle std::string. More... | |
template<typename T > | |
IPropertyManager * | setProperty (const std::string &name, const T &value) |
Templated method to set the value of a PropertyWithValue. More... | |
template<typename T > | |
IPropertyManager * | setProperty (const std::string &name, std::unique_ptr< T > value) |
Templated method to set the value of a PropertyWithValue from a std::unique_ptr. More... | |
void | setPropertyGroup (const std::string &name, const std::string &group) |
Set the group for a given property. More... | |
virtual void | setPropertyOrdinal (const int &index, const std::string &value)=0 |
Set the value of a property by an index. More... | |
void | setPropertySettings (const std::string &name, std::unique_ptr< IPropertySettings > settings) |
virtual void | setPropertyValue (const std::string &name, const std::string &value)=0 |
Sets property value from a string. More... | |
virtual void | setPropertyValueFromJson (const std::string &name, const Json::Value &value)=0 |
Sets property value from a Json::Value. More... | |
virtual void | splitByTime (std::vector< SplittingInterval > &, std::vector< PropertyManager * >) const =0 |
virtual std::unique_ptr< Property > | takeProperty (const size_t index)=0 |
Removes the property from management and returns a pointer to it. More... | |
void | updatePropertyValues (const IPropertyManager &other) |
Update values of the existing properties. More... | |
virtual bool | validateProperties () const =0 |
Validates all the properties in the collection. More... | |
virtual | ~IPropertyManager ()=default |
Private Member Functions | |
void | applyCorrection (const size_t inputIndex, const size_t outputIndex) |
Calculate & correct the given index of the input workspace. More... | |
void | cacheInstrumentGeometry () |
Compute & store the parameters that are fixed during the correction. More... | |
bool | calculateBackground (size_t inputIndex, size_t outputIndex) |
Avoid nested try catch in openmp loop by returning boolean if spectrum was corrceted. More... | |
void | calculateBackgroundFromFoils (const size_t inputIndex, const size_t outputIndex) |
Compute the expected background from the foils. More... | |
void | calculateBackgroundSingleFoil (std::vector< double > &ctfoil, const size_t wsIndex, const FoilInfo &foilInfo, const Kernel::V3D &detPos, const DetectorParams &detPar, const CurveFitting::Functions::ResolutionParams &detRes) |
Compute expected background from single foil for spectrum at wsIndex. More... | |
void | calculateSpectrumFromDetector (const size_t inputIndex, const size_t outputIndex) |
Compute the expected spectrum from a given detector. More... | |
std::pair< double, double > | calculateThetaRange (const Geometry::IComponent_const_sptr &foilComp, const double radius, const unsigned int horizDir) const |
Compute the theta range for a given foil. More... | |
std::vector< double > | calculateTofSpectrum (const std::vector< double > &inSpectrum, std::vector< double > &tmpWork, const size_t wsIndex, const DetectorParams &detpar, const CurveFitting::Functions::ResolutionParams &respar) |
Compute a TOF spectrum for the given inputs & spectrum. More... | |
void | createOutputWorkspaces () |
Create the output workspaces. More... | |
void | exec () override |
Virtual method - must be overridden by concrete algorithm. More... | |
void | init () override |
Virtual method - must be overridden by concrete algorithm. More... | |
void | retrieveInputs () |
Check and store appropriate input data. More... | |
Private Attributes | |
API::MatrixWorkspace_sptr | m_backgroundWS |
Stores the value of the calculated background. More... | |
API::MatrixWorkspace_sptr | m_correctedWS |
Stores the corrected data. More... | |
double | m_foilRadius |
Radius of (imaginary) circle that foils sit on. More... | |
std::vector< FoilInfo > | m_foils0 |
Description of foils in the position 0. More... | |
std::vector< FoilInfo > | m_foils1 |
Description of foils in the position 0. More... | |
double | m_foilUpMax |
Minimum in up dir to stop integration over foil volume. More... | |
double | m_foilUpMin |
Minimum in up dir to start integration over foil volume. More... | |
std::unordered_map< size_t, size_t > | m_indices |
Sorted indices to correct. More... | |
API::MatrixWorkspace_const_sptr | m_inputWS |
Input TOF data. More... | |
double | m_l1 |
Source to sample distance. More... | |
size_t | m_npeaks |
The number of peaks in spectrum. More... | |
std::string | m_profileFunction |
Function that defines the mass profile. More... | |
std::unique_ptr< API::Progress > | m_progress = nullptr |
Pointer to progress reporting. More... | |
std::set< specnum_t > | m_reversed |
List of spectra numbers whose background sum is to be reversed. More... | |
Kernel::V3D | m_samplePos |
Sample position. More... | |
Additional Inherited Members | |
Public Types inherited from Mantid::API::Algorithm | |
using | WorkspaceVector = std::vector< std::shared_ptr< Workspace > > |
Static Public Member Functions inherited from Mantid::API::Algorithm | |
static IAlgorithm_sptr | fromString (const std::string &input) |
De-serialize an object from a string. More... | |
static IAlgorithm_sptr | fromJson (const Json::Value &input) |
De-serialize an object from a Json. More... | |
static IAlgorithm_sptr | fromHistory (const AlgorithmHistory &history) |
Construct an object from a history entry. More... | |
Public Attributes inherited from Mantid::API::Algorithm | |
bool | calledByAlias = false |
Flag to indicate if the algorithm is called by its alias. More... | |
Protected Member Functions inherited from Mantid::API::Algorithm | |
void | exec (Parallel::ExecutionMode executionMode) |
Runs the algorithm with the specified execution mode. More... | |
virtual void | execDistributed () |
Runs the algorithm in distributed execution mode. More... | |
virtual void | execMasterOnly () |
Runs the algorithm in master-only execution mode. More... | |
virtual Parallel::ExecutionMode | getParallelExecutionMode (const std::map< std::string, Parallel::StorageMode > &storageModes) const |
Get correct execution mode based on input storage modes for an MPI run. More... | |
virtual const std::string | workspaceMethodOnTypes () const |
Returns a semi-colon separated list of workspace types to attach this algorithm. More... | |
void | cacheWorkspaceProperties () |
Go through the properties and cache the input/output workspace properties for later use. More... | |
void | cacheInputWorkspaceHistories () |
Cache the histories of any input workspaces so they can be copied over after algorithm completion. More... | |
void | setExecutionState (const ExecutionState state) |
Sets the current execution state. More... | |
void | setResultState (const ResultState state) |
Sets the result execution state. More... | |
void | store () |
Stores any output workspaces into the AnalysisDataService. More... | |
void | progress (double p, const std::string &msg="", double estimatedTime=0.0, int progressPrecision=0) |
Sends ProgressNotification. More... | |
void | interruption_point () |
This is called during long-running operations, and check if the algorithm has requested that it be cancelled. More... | |
Poco::NotificationCenter & | notificationCenter () const |
Return a reference to the algorithm's notification dispatcher. More... | |
void | handleChildProgressNotification (const Poco::AutoPtr< ProgressNotification > &pNf) |
Observation slot for child algorithm progress notification messages, these are scaled and then signalled for this algorithm. More... | |
const Poco::AbstractObserver & | progressObserver () const |
Return a reference to the algorithm's object that is reporting progress. More... | |
bool | isWorkspaceProperty (const Kernel::Property *const prop) const |
checks the property is a workspace property More... | |
bool | trackingHistory () |
get whether we are tracking the history for this algorithm, More... | |
virtual void | fillHistory () |
Copy workspace history for input workspaces to output workspaces and record the history for ths algorithm. More... | |
virtual void | setOtherProperties (IAlgorithm *alg, const std::string &propertyName, const std::string &propertyValue, int periodNum) |
Virtual method to set the non workspace properties for this algorithm. More... | |
template<typename T , const int AllowedIndexTypes = static_cast<int>(IndexType::WorkspaceIndex), typename... WSPropArgs, typename = typename std::enable_if<std::is_convertible<T *, MatrixWorkspace *>::value>::type> | |
void | declareWorkspaceInputProperties (const std::string &propertyName, const std::string &doc, WSPropArgs &&...wsPropArgs) |
Protected Member Functions inherited from Mantid::Kernel::IPropertyManager | |
virtual void | afterPropertySet (const std::string &) |
Override this method to perform a custom action right after a property was set. More... | |
virtual void | clear ()=0 |
Clears all properties under management. More... | |
virtual Property * | getPointerToPropertyOrdinal (const int &index) const =0 |
Get a property by an index. More... | |
template<typename T > | |
T | getValue (const std::string &name) const |
Templated method to get the value of a property. More... | |
template<> | |
MANTID_KERNEL_DLL PropertyManager_sptr | getValue (const std::string &name) const |
template<> | |
MANTID_KERNEL_DLL PropertyManager_const_sptr | getValue (const std::string &name) const |
Static Protected Member Functions inherited from Mantid::API::Algorithm | |
template<typename NumT > | |
static bool | isEmpty (const NumT toCheck) |
checks that the value was not set by users, uses the value in empty double/int. More... | |
Protected Attributes inherited from Mantid::API::Algorithm | |
std::atomic< bool > | m_cancel |
Set to true to stop execution. More... | |
std::atomic< bool > | m_parallelException |
Set if an exception is thrown, and not caught, within a parallel region. More... | |
std::vector< IWorkspaceProperty * > | m_inputWorkspaceProps |
All the WorkspaceProperties that are Input or InOut. Set in execute() More... | |
std::shared_ptr< AlgorithmHistory > | m_history |
Pointer to the history for the algorithm being executed. More... | |
Kernel::Logger | m_log |
Logger for this algorithm. More... | |
Kernel::Logger & | g_log |
std::shared_ptr< AlgorithmHistory > | m_parentHistory |
Pointer to the parent history object (if set) More... | |
std::vector< WorkspaceVector > | m_unrolledInputWorkspaces |
One vector of workspaces for each input workspace property. More... | |
size_t | m_groupSize |
Size of the group(s) being processed. More... | |
bool | m_usingBaseProcessGroups = false |
distinguish between base processGroups() and overriden/algorithm specific versions More... | |
Static Protected Attributes inherited from Mantid::API::Algorithm | |
static size_t | g_execCount = 0 |
Counter to keep track of algorithm execution order. More... | |
Definition at line 32 of file VesuvioCalculateGammaBackground.h.
Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::VesuvioCalculateGammaBackground | ( | ) |
Default constructor.
Definition at line 59 of file VesuvioCalculateGammaBackground.cpp.
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override |
Destructor.
Definition at line 65 of file VesuvioCalculateGammaBackground.cpp.
References m_indices.
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Calculate & correct the given index of the input workspace.
Calculate & apply gamma correction for the given index of the input workspace.
inputIndex | A workspace index that defines the input spectrum to correct |
outputIndex | A workspace index that defines the output to hold the results |
Definition at line 174 of file VesuvioCalculateGammaBackground.cpp.
References calculateBackgroundFromFoils(), calculateSpectrumFromDetector(), Mantid::API::Algorithm::g_log, Mantid::Kernel::Logger::information(), Mantid::Kernel::Logger::is(), m_backgroundWS, m_correctedWS, m_inputWS, and m_progress.
Referenced by calculateBackground().
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Compute & store the parameters that are fixed during the correction.
Definition at line 447 of file VesuvioCalculateGammaBackground.cpp.
References calculateThetaRange(), Mantid::Kernel::V3D::distance(), Mantid::API::Algorithm::g_log, Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::FoilInfo::gaussWidth, Mantid::CurveFitting::Algorithms::ConvertToYSpace::getComponentParameter(), Mantid::Kernel::Logger::information(), Mantid::Kernel::Logger::is(), Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::FoilInfo::lorentzWidth, m_foilRadius, m_foils0, m_foils1, m_foilUpMax, m_foilUpMin, m_inputWS, m_l1, m_samplePos, Mantid::Geometry::BoundingBox::maxPoint(), Mantid::Geometry::BoundingBox::minPoint(), Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::FoilInfo::thetaMax, and Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::FoilInfo::thetaMin.
Referenced by retrieveInputs().
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Avoid nested try catch in openmp loop by returning boolean if spectrum was corrceted.
Calculate the background from the input spectrum and assign the value to the output one.
inputIndex | The index on the input workspace on which to operate |
outputIndex | The index on the output workspace where the results are stored |
Definition at line 139 of file VesuvioCalculateGammaBackground.cpp.
References applyCorrection(), Mantid::API::Algorithm::g_log, Mantid::Kernel::Logger::information(), m_backgroundWS, m_correctedWS, m_inputWS, and std::to_string().
Referenced by exec().
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Compute the expected background from the foils.
Calculate & apply gamma correction for the given index of the input workspace.
inputIndex | Workspace index that defines the input spectrum to correct |
outputIndex | Workspace index that defines the spectrum to hold the results |
Definition at line 243 of file VesuvioCalculateGammaBackground.cpp.
References calculateBackgroundSingleFoil(), Mantid::CurveFitting::Algorithms::ConvertToYSpace::getDetectorParameters(), Mantid::CurveFitting::Functions::VesuvioResolution::getResolutionParameters(), m_backgroundWS, m_foils0, m_foils1, m_inputWS, m_reversed, and Mantid::CurveFitting::Algorithms::DetectorParams::pos.
Referenced by applyCorrection().
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Compute expected background from single foil for spectrum at wsIndex.
Integrates over the foil area defined by the foil radius to accumulate an estimate of the counts resulting from this region.
ctfoil | Output vector to hold results |
wsIndex | Index on output background workspaces currently operating |
foilInfo | Foil description object |
detPos | The pre-calculated detector V3D |
detPar | DetectorParams object that defines information on the detector associated with spectrum at wsIndex |
detRes | ResolutionParams object that defines information on the resolution associated with spectrum at wsIndex |
Integrates over the foils by dividing into 2cm^2 elements The integration is performed in cylindrical coordinates
Definition at line 287 of file VesuvioCalculateGammaBackground.cpp.
References calculateTofSpectrum(), Mantid::CurveFitting::Functions::ResolutionParams::dEnGauss, Mantid::CurveFitting::Functions::ResolutionParams::dEnLorentz, Mantid::Kernel::V3D::distance(), Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::FoilInfo::gaussWidth, Mantid::CurveFitting::Algorithms::DetectorParams::l2, Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::FoilInfo::lorentzWidth, m_foilRadius, m_foilUpMax, m_foilUpMin, m_samplePos, Mantid::Kernel::V3D::setX(), Mantid::Kernel::V3D::setY(), Mantid::Kernel::V3D::setZ(), Mantid::CurveFitting::Algorithms::DetectorParams::t0, Mantid::CurveFitting::Algorithms::DetectorParams::theta, Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::FoilInfo::thetaMax, Mantid::CurveFitting::Algorithms::VesuvioCalculateGammaBackground::FoilInfo::thetaMin, Mantid::Kernel::V3D::X(), and Mantid::Kernel::V3D::Z().
Referenced by calculateBackgroundFromFoils().
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Compute the expected spectrum from a given detector.
Results are placed in the mapped index on the output corrected workspace.
inputIndex | Workspace index that defines the input spectrum to correct |
outputIndex | Workspace index that defines the spectrum to hold the results |
Definition at line 219 of file VesuvioCalculateGammaBackground.cpp.
References calculateTofSpectrum(), Mantid::CurveFitting::Algorithms::ConvertToYSpace::getDetectorParameters(), Mantid::CurveFitting::Functions::VesuvioResolution::getResolutionParameters(), Mantid::CurveFitting::Algorithms::DetectorParams::l2, m_correctedWS, and m_inputWS.
Referenced by applyCorrection().
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Compute the theta range for a given foil.
foilComp | A pointer to the foil component |
radius | The radius that gives the distance to the centre of the bounding box |
horizDir | An enumeration defining which direction is horizontal |
Definition at line 537 of file VesuvioCalculateGammaBackground.cpp.
References radius.
Referenced by cacheInstrumentGeometry().
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Compute a TOF spectrum for the given inputs & spectrum.
Uses the compton profile functions to compute a particular mass spectrum.
inSpectrum | The value of the computed spectrum |
tmpWork | Pre-allocated working area that will be overwritten |
wsIndex | Index on the output background workspace that gives the X values to use |
detpar | Struct containing parameters about the detector |
respar | Struct containing parameters about the resolution |
Definition at line 348 of file VesuvioCalculateGammaBackground.cpp.
References Mantid::Kernel::SingletonHolder< T >::Instance(), m_backgroundWS, m_npeaks, m_profileFunction, and m_progress.
Referenced by calculateBackgroundSingleFoil(), and calculateSpectrumFromDetector().
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overridevirtual |
function to return a category of the algorithm.
A default implementation is provided
Reimplemented from Mantid::API::Algorithm.
Definition at line 75 of file VesuvioCalculateGammaBackground.cpp.
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Create the output workspaces.
Create & cache output workspaces.
Definition at line 441 of file VesuvioCalculateGammaBackground.cpp.
References Mantid::Kernel::SingletonHolder< T >::Instance(), m_backgroundWS, m_correctedWS, m_indices, and m_inputWS.
Referenced by exec().
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overrideprivatevirtual |
Virtual method - must be overridden by concrete algorithm.
Implements Mantid::API::Algorithm.
Definition at line 103 of file VesuvioCalculateGammaBackground.cpp.
References calculateBackground(), createOutputWorkspaces(), Mantid::API::Algorithm::g_log, Mantid::Kernel::Logger::information(), m_backgroundWS, m_correctedWS, m_foils0, m_indices, m_inputWS, m_npeaks, m_progress, PARALLEL_CHECK_INTERRUPT_REGION, PARALLEL_END_INTERRUPT_REGION, PARALLEL_FOR_IF, PARALLEL_START_INTERRUPT_REGION, retrieveInputs(), Mantid::Kernel::IPropertyManager::setProperty(), Mantid::Kernel::threadSafe(), and std::to_string().
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overrideprivatevirtual |
Virtual method - must be overridden by concrete algorithm.
Implements Mantid::API::Algorithm.
Definition at line 79 of file VesuvioCalculateGammaBackground.cpp.
References Mantid::API::Algorithm::declareProperty(), Mantid::Kernel::Direction::InOut, Mantid::Kernel::Direction::Input, and Mantid::Kernel::Direction::Output.
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overridevirtual |
function to return a name of the algorithm, must be overridden in all algorithms
Implements Mantid::API::Algorithm.
Definition at line 71 of file VesuvioCalculateGammaBackground.cpp.
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Check and store appropriate input data.
Caches input details for the peak information.
Definition at line 392 of file VesuvioCalculateGammaBackground.cpp.
References cacheInstrumentGeometry(), Mantid::API::Algorithm::getProperty(), Mantid::API::Algorithm::getPropertyValue(), Mantid::Kernel::SingletonHolder< T >::Instance(), m_indices, m_inputWS, m_npeaks, m_profileFunction, and m_reversed.
Referenced by exec().
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inlineoverridevirtual |
Function to return all of the seeAlso (these are not validated) algorithms related to this algorithm.A default implementation is provided.
Reimplemented from Mantid::API::Algorithm.
Definition at line 43 of file VesuvioCalculateGammaBackground.h.
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inlineoverridevirtual |
Summary of algorithms purpose.
Implements Mantid::API::Algorithm.
Definition at line 39 of file VesuvioCalculateGammaBackground.h.
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overridevirtual |
function to return a version of the algorithm, must be overridden in all algorithms
Implements Mantid::API::Algorithm.
Definition at line 73 of file VesuvioCalculateGammaBackground.cpp.
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private |
Stores the value of the calculated background.
Definition at line 115 of file VesuvioCalculateGammaBackground.h.
Referenced by applyCorrection(), calculateBackground(), calculateBackgroundFromFoils(), calculateTofSpectrum(), createOutputWorkspaces(), and exec().
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Stores the corrected data.
Definition at line 117 of file VesuvioCalculateGammaBackground.h.
Referenced by applyCorrection(), calculateBackground(), calculateSpectrumFromDetector(), createOutputWorkspaces(), and exec().
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Radius of (imaginary) circle that foils sit on.
Definition at line 104 of file VesuvioCalculateGammaBackground.h.
Referenced by cacheInstrumentGeometry(), and calculateBackgroundSingleFoil().
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Description of foils in the position 0.
Definition at line 111 of file VesuvioCalculateGammaBackground.h.
Referenced by cacheInstrumentGeometry(), calculateBackgroundFromFoils(), and exec().
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Description of foils in the position 0.
Definition at line 113 of file VesuvioCalculateGammaBackground.h.
Referenced by cacheInstrumentGeometry(), and calculateBackgroundFromFoils().
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Minimum in up dir to stop integration over foil volume.
Definition at line 108 of file VesuvioCalculateGammaBackground.h.
Referenced by cacheInstrumentGeometry(), and calculateBackgroundSingleFoil().
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Minimum in up dir to start integration over foil volume.
Definition at line 106 of file VesuvioCalculateGammaBackground.h.
Referenced by cacheInstrumentGeometry(), and calculateBackgroundSingleFoil().
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Sorted indices to correct.
Definition at line 91 of file VesuvioCalculateGammaBackground.h.
Referenced by createOutputWorkspaces(), exec(), retrieveInputs(), and ~VesuvioCalculateGammaBackground().
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Input TOF data.
Definition at line 89 of file VesuvioCalculateGammaBackground.h.
Referenced by applyCorrection(), cacheInstrumentGeometry(), calculateBackground(), calculateBackgroundFromFoils(), calculateSpectrumFromDetector(), createOutputWorkspaces(), exec(), and retrieveInputs().
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Source to sample distance.
Definition at line 102 of file VesuvioCalculateGammaBackground.h.
Referenced by cacheInstrumentGeometry().
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The number of peaks in spectrum.
Definition at line 95 of file VesuvioCalculateGammaBackground.h.
Referenced by calculateTofSpectrum(), exec(), and retrieveInputs().
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Function that defines the mass profile.
Definition at line 93 of file VesuvioCalculateGammaBackground.h.
Referenced by calculateTofSpectrum(), and retrieveInputs().
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Pointer to progress reporting.
Definition at line 120 of file VesuvioCalculateGammaBackground.h.
Referenced by applyCorrection(), calculateTofSpectrum(), and exec().
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List of spectra numbers whose background sum is to be reversed.
Definition at line 97 of file VesuvioCalculateGammaBackground.h.
Referenced by calculateBackgroundFromFoils(), and retrieveInputs().
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Sample position.
Definition at line 100 of file VesuvioCalculateGammaBackground.h.
Referenced by cacheInstrumentGeometry(), and calculateBackgroundSingleFoil().