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Mantid
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MDNormSCD : Generate MD normalization for single crystal diffraction. More...
#include <MDNormSCD.h>
Public Member Functions | |
| const std::string | category () const override |
| Algorithm's category for identification. More... | |
| MDNormSCD () | |
| Constructor. More... | |
| const std::string | name () const override |
| Algorithm's name for use in the GUI and help. More... | |
| const std::vector< std::string > | seeAlso () const override |
| Function to return all of the seeAlso (these are not validated) algorithms related to this algorithm.A default implementation is provided. More... | |
| const std::string | summary () const override |
| Algorithm's summary for use in the GUI and help. More... | |
| int | version () const override |
| Algorithm's version for identification. More... | |
Public Member Functions inherited from Mantid::MDAlgorithms::SlicingAlgorithm | |
| SlicingAlgorithm () | |
| Constructor. More... | |
Public Member Functions inherited from Mantid::API::Algorithm | |
| Algorithm () | |
| Constructor. More... | |
| Algorithm (const Algorithm &)=delete | |
| Algorithm & | operator= (const Algorithm &)=delete |
| ~Algorithm () override | |
| Virtual destructor. More... | |
| void | initialize () override |
| Initialization method invoked by the framework. More... | |
| bool | execute () override final |
| The actions to be performed by the algorithm on a dataset. More... | |
| void | addTimer (const std::string &name, const Kernel::time_point_ns &begin, const Kernel::time_point_ns &end) |
| void | executeAsChildAlg () override |
| Execute as a Child Algorithm. More... | |
| std::map< std::string, std::string > | validateInputs () override |
| Perform validation of ALL the input properties of the algorithm. More... | |
| ExecutionState | executionState () const override |
| Gets the current execution state. More... | |
| ResultState | resultState () const override |
| Gets the current result State. More... | |
| bool | isInitialized () const override |
| Has the Algorithm already been initialized. More... | |
| bool | isExecuted () const override |
| Has the Algorithm already been executed successfully. More... | |
| bool | isRunning () const override |
| True if the algorithm is running. More... | |
| bool | isReadyForGarbageCollection () const override |
| True if the algorithm is ready for garbage collection. More... | |
| bool | isChild () const override |
| To query whether algorithm is a child. More... | |
| void | setChild (const bool isChild) override |
| To set whether algorithm is a child. More... | |
| void | enableHistoryRecordingForChild (const bool on) override |
| Change the state of the history recording flag. More... | |
| bool | isRecordingHistoryForChild () |
| void | setAlwaysStoreInADS (const bool doStore) override |
| Do we ALWAYS store in the AnalysisDataService? This is set to true for python algorithms' child algorithms. More... | |
| bool | getAlwaysStoreInADS () const override |
| Returns true if we always store in the AnalysisDataService. More... | |
| void | setRethrows (const bool rethrow) override |
| Set whether the algorithm will rethrow exceptions. More... | |
| Poco::ActiveResult< bool > | executeAsync () override |
| Asynchronous execution. More... | |
| void | addObserver (const Poco::AbstractObserver &observer) const override |
| Add an observer for a notification. More... | |
| void | removeObserver (const Poco::AbstractObserver &observer) const override |
| Remove an observer. More... | |
| void | cancel () override |
| Raises the cancel flag. More... | |
| bool | getCancel () const |
| Returns the cancellation state. More... | |
| Kernel::Logger & | getLogger () const |
| Returns a reference to the logger. More... | |
| void | setLogging (const bool value) override |
| Logging can be disabled by passing a value of false. More... | |
| bool | isLogging () const override |
| returns the status of logging, True = enabled More... | |
| void | setLoggingOffset (const int value) override |
| gets the logging priority offset More... | |
| int | getLoggingOffset () const override |
| returns the logging priority offset More... | |
| void | setAlgStartupLogging (const bool enabled) override |
| disable Logging of start and end messages More... | |
| bool | getAlgStartupLogging () const override |
| get the state of Logging of start and end messages More... | |
| void | setChildStartProgress (const double startProgress) const override |
| setting the child start progress More... | |
| void | setChildEndProgress (const double endProgress) const override |
| setting the child end progress More... | |
| std::string | toString () const override |
| Serialize an object to a string. More... | |
| ::Json::Value | toJson () const override |
| Serialize an object to a json object. More... | |
| virtual std::shared_ptr< Algorithm > | createChildAlgorithm (const std::string &name, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true, const int &version=-1) |
| Create a Child Algorithm. More... | |
| void | setupAsChildAlgorithm (const Algorithm_sptr &algorithm, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true) |
| Setup algorithm as child algorithm. More... | |
| void | trackAlgorithmHistory (std::shared_ptr< AlgorithmHistory > parentHist) |
| set whether we wish to track the child algorithm's history and pass it the parent object to fill. More... | |
| void | findWorkspaces (WorkspaceVector &workspaces, unsigned int direction, bool checkADS=false) const |
| Populate lists of the workspace properties for a given direction (InOut workspaces are included in both input/output) More... | |
| virtual bool | checkGroups () |
| Check the input workspace properties for groups. More... | |
| virtual bool | processGroups () |
| Process WorkspaceGroup inputs. More... | |
| void | copyNonWorkspaceProperties (IAlgorithm *alg, int periodNum) |
| Copy all the non-workspace properties from this to alg. More... | |
| const Parallel::Communicator & | communicator () const |
| Returns a const reference to the (MPI) communicator of the algorithm. More... | |
| void | setCommunicator (const Parallel::Communicator &communicator) |
| Sets the (MPI) communicator of the algorithm. More... | |
| void | declareProperty (std::unique_ptr< Kernel::Property > p, const std::string &doc="") override |
| Add a property to the list of managed properties. More... | |
| void | declareOrReplaceProperty (std::unique_ptr< Kernel::Property > p, const std::string &doc="") override |
| Add or replace property in the list of managed properties. More... | |
| void | resetProperties () override |
| Reset property values back to initial values (blank or default values) More... | |
| void | setProperties (const std::string &propertiesJson, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false) override |
| Set the ordered list of properties by one string of values, separated by semicolons. More... | |
| void | setProperties (const ::Json::Value &jsonValue, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false) override |
| Sets all the declared properties from a json object. More... | |
| void | setPropertiesWithString (const std::string &propertiesString, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >()) override |
| Sets all the declared properties from a string. More... | |
| void | setPropertyValue (const std::string &name, const std::string &value) override |
| Set the value of a property by string N.B. More... | |
| void | setPropertyValueFromJson (const std::string &name, const Json::Value &value) override |
| Set the value of a property by Json::Value object. More... | |
| void | setPropertyOrdinal (const int &index, const std::string &value) override |
| Set the value of a property by an index N.B. More... | |
| virtual void | copyPropertiesFrom (const Algorithm &alg) |
| Make m_properties point to the same PropertyManager as alg.m_properties. More... | |
| bool | existsProperty (const std::string &name) const override |
| Checks whether the named property is already in the list of managed property. More... | |
| bool | validateProperties () const override |
| Validates all the properties in the collection. More... | |
| size_t | propertyCount () const override |
| Count the number of properties under management. More... | |
| std::string | getPropertyValue (const std::string &name) const override |
| Get the value of a property as a string. More... | |
| const std::vector< Kernel::Property * > & | getProperties () const override |
| Get the list of managed properties. More... | |
| std::vector< std::string > | getDeclaredPropertyNames () const noexcept override |
| Return the list of declared property names. More... | |
| TypedValue | getProperty (const std::string &name) const override |
| Get the value of a property. More... | |
| std::string | asString (bool withDefaultValues=false) const override |
| Return the property manager serialized as a string. More... | |
| ::Json::Value | asJson (bool withDefaultValues=false) const override |
| Return the property manager serialized as a json object. More... | |
| bool | isDefault (const std::string &name) const |
| void | removeProperty (const std::string &name, const bool delproperty=true) override |
| Removes the property from management. More... | |
| std::unique_ptr< Kernel::Property > | takeProperty (const size_t index) override |
| Removes the property from management and returns a pointer to it. More... | |
| void | clear () override |
| Clears all properties under management. More... | |
| void | afterPropertySet (const std::string &) override |
| Override this method to perform a custom action right after a property was set. More... | |
| void | filterByTime (const Types::Core::DateAndTime &, const Types::Core::DateAndTime &) override |
| void | splitByTime (std::vector< Kernel::SplittingInterval > &, std::vector< Kernel::PropertyManager * >) const override |
| void | filterByProperty (const Kernel::TimeSeriesProperty< bool > &, const std::vector< std::string > &) override |
| Kernel::Property * | getPointerToProperty (const std::string &name) const override |
| Get a property by name. More... | |
| Kernel::Property * | getPointerToPropertyOrdinal (const int &index) const override |
| Get a property by an index. More... | |
| virtual void | declareProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
| Function to declare properties (i.e. store them) More... | |
| template<typename T > | |
| void | declareProperty (const std::string &name, T value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc="", const unsigned int direction=Direction::Input) |
| Add a property of the template type to the list of managed properties. More... | |
| template<typename T > | |
| void | declareProperty (const std::string &name, T value, const std::string &doc, const unsigned int direction=Direction::Input) |
| Add a property to the list of managed properties with no validator. More... | |
| template<typename T > | |
| void | declareProperty (const std::string &name, T value, const unsigned int direction) |
| Add a property of the template type to the list of managed properties. More... | |
| void | declareProperty (const std::string &name, const char *value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc=std::string(), const unsigned int direction=Direction::Input) |
| Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
| void | declareProperty (const std::string &name, const char *value, const std::string &doc, IValidator_sptr validator=std::make_shared< NullValidator >(), const unsigned int direction=Direction::Input) |
| Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
| void | declareProperty (const std::string &name, const char *value, const unsigned int direction) |
| Add a property of string type to the list of managed properties. More... | |
| const std::vector< std::string > | categories () const override |
| Function to return all of the categories that contain this algorithm. More... | |
| const std::string | categorySeparator () const override |
| Function to return the separator token for the category string. More... | |
| const std::string | alias () const override |
| function to return any aliases to the algorithm; A default implementation is provided More... | |
| const std::string | aliasDeprecated () const override |
| Expiration date (in ISO8601 format) for the algorithm aliases; default implementation for no expiration date. More... | |
| const std::string | helpURL () const override |
| function to return URL for algorithm documentation; A default implementation is provided. More... | |
| template<typename T , typename = typename std::enable_if<std::is_convertible<T *, MatrixWorkspace *>::value>::type> | |
| std::tuple< std::shared_ptr< T >, Indexing::SpectrumIndexSet > | getWorkspaceAndIndices (const std::string &name) const |
| template<typename T1 , typename T2 , typename = typename std::enable_if<std::is_convertible<T1 *, MatrixWorkspace *>::value>::type, typename = typename std::enable_if<std::is_convertible<T2 *, std::string *>::value || std::is_convertible<T2 *, std::vector<int64_t> *>::value>::type> | |
| void | setWorkspaceInputProperties (const std::string &name, const std::shared_ptr< T1 > &wksp, IndexType type, const T2 &list) |
| template<typename T1 , typename T2 , typename = typename std::enable_if<std::is_convertible<T1 *, MatrixWorkspace *>::value>::type, typename = typename std::enable_if<std::is_convertible<T2 *, std::string *>::value || std::is_convertible<T2 *, std::vector<int64_t> *>::value>::type> | |
| void | setWorkspaceInputProperties (const std::string &name, const std::string &wsName, IndexType type, const T2 &list) |
| const std::string | workspaceMethodName () const override |
| const std::vector< std::string > | workspaceMethodOn () const override |
| const std::string | workspaceMethodInputProperty () const override |
| AlgorithmID | getAlgorithmID () const override |
| Algorithm ID. More... | |
| virtual void | addObserver (const Poco::AbstractObserver &observer) const =0 |
| Add an observer for a notification. More... | |
| virtual const std::string | alias () const =0 |
| function to return any aliases of the algorithm. More... | |
| virtual const std::string | aliasDeprecated () const =0 |
| Expiration date (in ISO8601 format) for the algorithm aliases. Empty if no expiration date. More... | |
| virtual void | cancel ()=0 |
| Raises the cancel flag. More... | |
| virtual const std::vector< std::string > | categories () const =0 |
| Function to return all of the categories that contain this algorithm. More... | |
| virtual const std::string | category () const =0 |
| function to return a category of the algorithm. More... | |
| virtual const std::string | categorySeparator () const =0 |
| Function to return the separator token for the category string. More... | |
| virtual void | enableHistoryRecordingForChild (const bool on)=0 |
| If true history will be recorded for a child. More... | |
| virtual bool | execute ()=0 |
| System execution. More... | |
| virtual void | executeAsChildAlg ()=0 |
| Execute as a Child Algorithm, with try/catch. More... | |
| virtual Poco::ActiveResult< bool > | executeAsync ()=0 |
| Asynchronous execution of the algorithm. More... | |
| virtual ExecutionState | executionState () const =0 |
| Gets the current execution state. More... | |
| virtual AlgorithmID | getAlgorithmID () const =0 |
| Algorithm ID. More... | |
| virtual bool | getAlgStartupLogging () const =0 |
| get the state of Logging of start and end messages More... | |
| virtual bool | getAlwaysStoreInADS () const =0 |
| To query whether the output is stored in the analysis data service. More... | |
| virtual int | getLoggingOffset () const =0 |
| returns the logging priority offset More... | |
| virtual const std::string | helpURL () const =0 |
| function to return an optional URL for documentation. More... | |
| virtual void | initialize ()=0 |
| Initialization method invoked by the framework. More... | |
| virtual bool | isChild () const =0 |
| To query whether algorithm is a child. Default to false. More... | |
| virtual bool | isExecuted () const =0 |
| Check whether the algorithm has been executed sucessfully. More... | |
| virtual bool | isInitialized () const =0 |
| Check whether the algorithm is initialized properly. More... | |
| virtual bool | isLogging () const =0 |
| returns the status of logging, True = enabled More... | |
| virtual bool | isReadyForGarbageCollection () const =0 |
| True if the algorithm is ready for garbage collection. More... | |
| virtual bool | isRunning () const =0 |
| True if the algorithm is running. More... | |
| virtual const std::string | name () const =0 |
| function to return a name of the algorithm, must be overridden in all algorithms More... | |
| virtual void | removeObserver (const Poco::AbstractObserver &observer) const =0 |
| Remove an observer. More... | |
| virtual ResultState | resultState () const =0 |
| Gets the currnet result State. More... | |
| virtual const std::vector< std::string > | seeAlso () const =0 |
| Function to return all of the seeAlso algorithms related to this algorithm. More... | |
| virtual void | setAlgStartupLogging (const bool enabled)=0 |
| disable Logging of start and end messages More... | |
| virtual void | setAlwaysStoreInADS (const bool doStore)=0 |
| Set whether we always store the output in the analysis data service. More... | |
| virtual void | setChild (const bool isChild)=0 |
| To set whether algorithm is a child. More... | |
| virtual void | setChildEndProgress (const double endProgress) const =0 |
| setting the child end progress More... | |
| virtual void | setChildStartProgress (const double startProgress) const =0 |
| setting the child start progress More... | |
| virtual void | setLogging (const bool value)=0 |
| Logging can be disabled by passing a value of false. More... | |
| virtual void | setLoggingOffset (const int value)=0 |
| gets the logging priority offset More... | |
| virtual void | setRethrows (const bool rethrow)=0 |
| To query whether an algorithm should rethrow exceptions when executing. More... | |
| virtual const std::string | summary () const =0 |
| function returns a summary message that will be displayed in the default GUI, and in the help. More... | |
| virtual ::Json::Value | toJson () const =0 |
| Serialize an algorithm as Json. More... | |
| virtual std::string | toString () const =0 |
| Serialize an algorithm. More... | |
| virtual std::map< std::string, std::string > | validateInputs ()=0 |
| Method checking errors on ALL the inputs, before execution. More... | |
| virtual int | version () const =0 |
| function to return a version of the algorithm, must be overridden in all algorithms More... | |
Algorithms As Methods | |
Public Member Functions inherited from Mantid::Kernel::IPropertyManager | |
| virtual ::Json::Value | asJson (bool withDefaultValues=false) const =0 |
| Return the property manager serialized as a json object. More... | |
| virtual std::string | asString (bool withDefaultValues=false) const =0 |
| Return the property manager serialized as a string. More... | |
| virtual void | declareOrReplaceProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
| Function to declare properties (i.e. store them) More... | |
| void | declareProperty (const std::string &name, const char *value, const std::string &doc, IValidator_sptr validator=std::make_shared< NullValidator >(), const unsigned int direction=Direction::Input) |
| Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
| void | declareProperty (const std::string &name, const char *value, const unsigned int direction) |
| Add a property of string type to the list of managed properties. More... | |
| void | declareProperty (const std::string &name, const char *value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc=std::string(), const unsigned int direction=Direction::Input) |
| Specialised version of declareProperty template method to prevent the creation of a PropertyWithValue of type const char* if an argument in quotes is passed (it will be converted to a string). More... | |
| template<typename T > | |
| void | declareProperty (const std::string &name, T value, const std::string &doc, const unsigned int direction=Direction::Input) |
| Add a property to the list of managed properties with no validator. More... | |
| template<typename T > | |
| void | declareProperty (const std::string &name, T value, const unsigned int direction) |
| Add a property of the template type to the list of managed properties. More... | |
| template<typename T > | |
| void | declareProperty (const std::string &name, T value, IValidator_sptr validator=std::make_shared< NullValidator >(), const std::string &doc="", const unsigned int direction=Direction::Input) |
| Add a property of the template type to the list of managed properties. More... | |
| virtual void | declareProperty (std::unique_ptr< Property > p, const std::string &doc="")=0 |
| Function to declare properties (i.e. store them) More... | |
| virtual bool | existsProperty (const std::string &name) const =0 |
| Checks whether the named property is already in the list of managed property. More... | |
| virtual void | filterByProperty (const TimeSeriesProperty< bool > &, const std::vector< std::string > &)=0 |
| virtual void | filterByTime (const Types::Core::DateAndTime &, const Types::Core::DateAndTime &)=0 |
| virtual std::vector< std::string > | getDeclaredPropertyNames () const noexcept=0 |
| Get the list of managed property names. More... | |
| virtual Property * | getPointerToProperty (const std::string &name) const =0 |
| Get a pointer to property by name. More... | |
| virtual const std::vector< Property * > & | getProperties () const =0 |
| Get the list of managed properties. More... | |
| std::vector< Property * > | getPropertiesInGroup (const std::string &group) const |
| Get the list of managed properties in a given group. More... | |
| virtual TypedValue | getProperty (const std::string &name) const =0 |
| Get the value of a property. More... | |
| virtual std::string | getPropertyValue (const std::string &name) const =0 |
| Get the value of a property as a string. More... | |
| virtual size_t | propertyCount () const =0 |
| Returns the number of properties under management. More... | |
| virtual void | removeProperty (const std::string &name, const bool delproperty=true)=0 |
| Removes the property from management. More... | |
| virtual void | resetProperties ()=0 |
| virtual void | setProperties (const ::Json::Value &jsonValue, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false)=0 |
| Sets all the properties from a json object. More... | |
| virtual void | setProperties (const std::string &propertiesJson, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >(), bool createMissing=false)=0 |
| Sets all properties from a string. More... | |
| virtual void | setPropertiesWithString (const std::string &propertiesString, const std::unordered_set< std::string > &ignoreProperties=std::unordered_set< std::string >())=0 |
| Sets all the declared properties from a string. More... | |
| IPropertyManager * | setProperty (const std::string &name, const char *value) |
| Specialised version of setProperty template method to handle const char *. More... | |
| IPropertyManager * | setProperty (const std::string &name, const std::string &value) |
| Specialised version of setProperty template method to handle std::string. More... | |
| template<typename T > | |
| IPropertyManager * | setProperty (const std::string &name, const T &value) |
| Templated method to set the value of a PropertyWithValue. More... | |
| template<typename T > | |
| IPropertyManager * | setProperty (const std::string &name, std::unique_ptr< T > value) |
| Templated method to set the value of a PropertyWithValue from a std::unique_ptr. More... | |
| void | setPropertyGroup (const std::string &name, const std::string &group) |
| Set the group for a given property. More... | |
| virtual void | setPropertyOrdinal (const int &index, const std::string &value)=0 |
| Set the value of a property by an index. More... | |
| void | setPropertySettings (const std::string &name, std::unique_ptr< IPropertySettings > settings) |
| virtual void | setPropertyValue (const std::string &name, const std::string &value)=0 |
| Sets property value from a string. More... | |
| virtual void | setPropertyValueFromJson (const std::string &name, const Json::Value &value)=0 |
| Sets property value from a Json::Value. More... | |
| virtual void | splitByTime (std::vector< SplittingInterval > &, std::vector< PropertyManager * >) const =0 |
| virtual std::unique_ptr< Property > | takeProperty (const size_t index)=0 |
| Removes the property from management and returns a pointer to it. More... | |
| void | updatePropertyValues (const IPropertyManager &other) |
| Update values of the existing properties. More... | |
| virtual bool | validateProperties () const =0 |
| Validates all the properties in the collection. More... | |
| virtual | ~IPropertyManager ()=default |
Private Member Functions | |
| DataObjects::MDHistoWorkspace_sptr | binInputWS () |
| Runs the BinMD algorithm on the input to provide the output workspace All slicing algorithm properties are passed along. More... | |
| void | cacheDimensionXValues () |
| Stores the X values from each H,K,L dimension as member variables. More... | |
| void | cacheInputs () |
| Set up starting values for cached variables. More... | |
| void | calcIntegralsForIntersections (const std::vector< double > &xValues, const API::MatrixWorkspace &integrFlux, size_t sp, std::vector< double > &yValues) const |
| Linearly interpolate between the points in integrFlux at xValues and save the results in yValues. More... | |
| void | calculateIntersections (std::vector< std::array< double, 4 > > &intersections, const double theta, const double phi) |
| Calculate the points of intersection for the given detector with cuboid surrounding the detector position in HKL. More... | |
| void | calculateNormalization (const std::vector< coord_t > &otherValues, const Kernel::Matrix< coord_t > &affineTrans, uint16_t expInfoIndex) |
| Computed the normalization for the input workspace. More... | |
| void | createNormalizationWS (const DataObjects::MDHistoWorkspace &dataWS) |
| Create & cached the normalization workspace. More... | |
| void | exec () override |
| Execute the algorithm. More... | |
| Kernel::Matrix< coord_t > | findIntergratedDimensions (const std::vector< coord_t > &otherDimValues, bool &skipNormalization) |
| Checks the normalization workspace against the indices of the original dimensions. More... | |
| std::vector< coord_t > | getValuesFromOtherDimensions (bool &skipNormalization, uint16_t expInfoIndex=0) const |
| Retrieve logged values from non-HKL dimensions. More... | |
| void | init () override |
| Initialize the algorithm's properties. More... | |
| std::string | inputEnergyMode () const |
| Currently looks for the ConvertToMD algorithm in the history. More... | |
Private Attributes | |
| std::string | convention |
| ki-kf for Inelastic convention; kf-ki for Crystallography convention More... | |
| bool | m_accumulate {false} |
| internal flag to accumulate to an existing workspace More... | |
| Kernel::V3D | m_beamDir |
| Beam direction. More... | |
| size_t | m_hIdx |
| index of h,k,l dimensions in the output workspaces More... | |
| bool | m_hIntegrated |
| flag for integrated h,k,l dimensions More... | |
| coord_t | m_hmax |
| coord_t | m_hmin |
| limits for h,k,l dimensions More... | |
| std::vector< double > | m_hX |
| cached X values along dimensions h,k,l More... | |
| API::IMDEventWorkspace_sptr | m_inputWS |
| Input workspace. More... | |
| size_t | m_kIdx |
| double | m_kiMax |
| double | m_kiMin |
| limits for momentum More... | |
| bool | m_kIntegrated |
| coord_t | m_kmax |
| coord_t | m_kmin |
| std::vector< double > | m_kX |
| size_t | m_lIdx |
| bool | m_lIntegrated |
| coord_t | m_lmax |
| coord_t | m_lmin |
| std::vector< double > | m_lX |
| DataObjects::MDHistoWorkspace_sptr | m_normWS |
| Normalization workspace. More... | |
| uint16_t | m_numExptInfos |
| number of experiment infos More... | |
| Mantid::Kernel::DblMatrix | m_rubw |
| (2*PiRUBW)^-1 More... | |
| Kernel::V3D | m_samplePos |
| Sample position. More... | |
Additional Inherited Members | |
Public Types inherited from Mantid::API::Algorithm | |
| using | WorkspaceVector = std::vector< std::shared_ptr< Workspace > > |
Static Public Member Functions inherited from Mantid::MDAlgorithms::SlicingAlgorithm | |
| static std::string | getDimensionChars () |
Static Public Member Functions inherited from Mantid::API::Algorithm | |
| static IAlgorithm_sptr | fromString (const std::string &input) |
| De-serialize an object from a string. More... | |
| static IAlgorithm_sptr | fromJson (const Json::Value &input) |
| De-serialize an object from a Json. More... | |
| static IAlgorithm_sptr | fromHistory (const AlgorithmHistory &history) |
| Construct an object from a history entry. More... | |
Public Attributes inherited from Mantid::API::Algorithm | |
| bool | calledByAlias = false |
| Flag to indicate if the algorithm is called by its alias. More... | |
Protected Member Functions inherited from Mantid::MDAlgorithms::SlicingAlgorithm | |
| void | createAlignedTransform () |
| Using the parameters, create a coordinate transformation for aligned cuts. More... | |
| void | createGeneralTransform () |
| Loads the dimensions and create the coordinate transform, using the inputs. More... | |
| void | createTransform () |
| Read the algorithm properties and creates the appropriate transforms for slicing the MDEventWorkspace. More... | |
| std::unique_ptr< Mantid::Geometry::MDImplicitFunction > | getGeneralImplicitFunction (const size_t *const chunkMin, const size_t *const chunkMax) |
| Create an implicit function for picking boxes, based on the indexes in the output MDHistoWorkspace. More... | |
| std::unique_ptr< Mantid::Geometry::MDImplicitFunction > | getImplicitFunctionForChunk (const size_t *const chunkMin, const size_t *const chunkMax) |
| Create an implicit function for picking boxes, based on the indexes in the output MDHistoWorkspace. More... | |
| void | initSlicingProps () |
| Initialise the properties. More... | |
| void | makeAlignedDimensionFromString (const std::string &str) |
| Generate a MDHistoDimension_sptr from a comma-sep string (for AlignedDim0, etc.) Must be called in order X,Y,Z,T. More... | |
| void | makeBasisVectorFromString (const std::string &str) |
| Generate the MDHistoDimension and basis vector for a given string from BasisVector0 etc. More... | |
| void | processGeneralTransformProperties () |
| Reads the various Properties for the general (non-aligned) case and fills in members on the Algorithm for later use. More... | |
| ~SlicingAlgorithm ()=default | |
Protected Member Functions inherited from Mantid::API::Algorithm | |
| void | exec (Parallel::ExecutionMode executionMode) |
| Runs the algorithm with the specified execution mode. More... | |
| virtual void | execDistributed () |
Runs the algorithm in distributed execution mode. More... | |
| virtual void | execMasterOnly () |
Runs the algorithm in master-only execution mode. More... | |
| virtual Parallel::ExecutionMode | getParallelExecutionMode (const std::map< std::string, Parallel::StorageMode > &storageModes) const |
| Get correct execution mode based on input storage modes for an MPI run. More... | |
| virtual const std::string | workspaceMethodOnTypes () const |
| Returns a semi-colon separated list of workspace types to attach this algorithm. More... | |
| void | cacheWorkspaceProperties () |
| Go through the properties and cache the input/output workspace properties for later use. More... | |
| void | cacheInputWorkspaceHistories () |
| Cache the histories of any input workspaces so they can be copied over after algorithm completion. More... | |
| void | setExecutionState (const ExecutionState state) |
| Sets the current execution state. More... | |
| void | setResultState (const ResultState state) |
| Sets the result execution state. More... | |
| void | store () |
| Stores any output workspaces into the AnalysisDataService. More... | |
| void | progress (double p, const std::string &msg="", double estimatedTime=0.0, int progressPrecision=0) |
| Sends ProgressNotification. More... | |
| void | interruption_point () |
| This is called during long-running operations, and check if the algorithm has requested that it be cancelled. More... | |
| Poco::NotificationCenter & | notificationCenter () const |
| Return a reference to the algorithm's notification dispatcher. More... | |
| void | handleChildProgressNotification (const Poco::AutoPtr< ProgressNotification > &pNf) |
| Observation slot for child algorithm progress notification messages, these are scaled and then signalled for this algorithm. More... | |
| const Poco::AbstractObserver & | progressObserver () const |
| Return a reference to the algorithm's object that is reporting progress. More... | |
| bool | isWorkspaceProperty (const Kernel::Property *const prop) const |
| checks the property is a workspace property More... | |
| bool | trackingHistory () |
| get whether we are tracking the history for this algorithm, More... | |
| virtual void | fillHistory () |
| Copy workspace history for input workspaces to output workspaces and record the history for ths algorithm. More... | |
| virtual void | setOtherProperties (IAlgorithm *alg, const std::string &propertyName, const std::string &propertyValue, int periodNum) |
| Virtual method to set the non workspace properties for this algorithm. More... | |
| template<typename T , const int AllowedIndexTypes = static_cast<int>(IndexType::WorkspaceIndex), typename... WSPropArgs, typename = typename std::enable_if<std::is_convertible<T *, MatrixWorkspace *>::value>::type> | |
| void | declareWorkspaceInputProperties (const std::string &propertyName, const std::string &doc, WSPropArgs &&...wsPropArgs) |
Protected Member Functions inherited from Mantid::Kernel::IPropertyManager | |
| virtual void | afterPropertySet (const std::string &) |
| Override this method to perform a custom action right after a property was set. More... | |
| virtual void | clear ()=0 |
| Clears all properties under management. More... | |
| virtual Property * | getPointerToPropertyOrdinal (const int &index) const =0 |
| Get a property by an index. More... | |
| template<typename T > | |
| T | getValue (const std::string &name) const |
| Templated method to get the value of a property. More... | |
| template<> | |
| MANTID_KERNEL_DLL PropertyManager_sptr | getValue (const std::string &name) const |
| template<> | |
| MANTID_KERNEL_DLL PropertyManager_const_sptr | getValue (const std::string &name) const |
Static Protected Member Functions inherited from Mantid::API::Algorithm | |
| template<typename NumT > | |
| static bool | isEmpty (const NumT toCheck) |
| checks that the value was not set by users, uses the value in empty double/int. More... | |
Protected Attributes inherited from Mantid::MDAlgorithms::SlicingAlgorithm | |
| bool | m_axisAligned |
| Set to true if the cut is aligned with the axes. More... | |
| std::vector< Mantid::Kernel::VMD > | m_bases |
| Basis vectors of the output dimensions, normalized to unity length. More... | |
| std::vector< Mantid::Geometry::MDHistoDimension_sptr > | m_binDimensions |
| Bin dimensions to actually use. More... | |
| std::vector< double > | m_binningScaling |
| Scaling factor to apply for each basis vector (to map to the bins). More... | |
| std::vector< size_t > | m_dimensionToBinFrom |
| Index of the dimension in the MDEW for the dimension in the output. More... | |
| Mantid::Kernel::VMD | m_inputMinPoint |
| Coordinates in the INPUT workspace corresponding to the minimum edge in all dimensions. More... | |
| Mantid::API::IMDWorkspace_sptr | m_intermediateWS |
| Intermediate original workspace. More... | |
| Mantid::API::IMDWorkspace_sptr | m_inWS |
| Input workspace. More... | |
| std::vector< double > | m_maxExtents |
| For non-aligned, the maximum coordinate extents in each OUTPUT dimension. More... | |
| std::vector< double > | m_minExtents |
| For non-aligned, the minimum coordinate extents in each OUTPUT dimension. More... | |
| bool | m_NormalizeBasisVectors |
| The NormalizeBasisVectors option. More... | |
| std::vector< int > | m_numBins |
| For non-aligned, the number of bins in each OUTPUT dimension. More... | |
| Mantid::API::IMDWorkspace_sptr | m_originalWS |
| Original (MDEventWorkspace) that inWS was based on. More... | |
| size_t | m_outD |
| Number of dimensions in the output (binned) workspace. More... | |
| std::unique_ptr< API::CoordTransform > | m_transform |
| Coordinate transformation to apply. More... | |
| std::unique_ptr< DataObjects::CoordTransformAffine > | m_transformFromIntermediate |
| Coordinate transformation to save in the output WS, from the intermediate WS. More... | |
| std::unique_ptr< API::CoordTransform > | m_transformFromOriginal |
| Coordinate transformation to save in the output workspace (original->binned) More... | |
| std::vector< double > | m_transformScaling |
| Scaling factor to apply for each basis vector to transfor to the output dimensions. More... | |
| std::unique_ptr< DataObjects::CoordTransformAffine > | m_transformToIntermediate |
| Coordinate transformation to save in the intermediate WS. More... | |
| std::unique_ptr< API::CoordTransform > | m_transformToOriginal |
| Coordinate transformation to save in the output workspace (binned->original) More... | |
| Mantid::Kernel::VMD | m_translation |
| Translation from the OUTPUT to the INPUT workspace i.e. More... | |
Protected Attributes inherited from Mantid::API::Algorithm | |
| std::atomic< bool > | m_cancel |
| Set to true to stop execution. More... | |
| std::atomic< bool > | m_parallelException |
| Set if an exception is thrown, and not caught, within a parallel region. More... | |
| std::vector< IWorkspaceProperty * > | m_inputWorkspaceProps |
| All the WorkspaceProperties that are Input or InOut. Set in execute() More... | |
| std::shared_ptr< AlgorithmHistory > | m_history |
| Pointer to the history for the algorithm being executed. More... | |
| Kernel::Logger | m_log |
| Logger for this algorithm. More... | |
| Kernel::Logger & | g_log |
| std::shared_ptr< AlgorithmHistory > | m_parentHistory |
| Pointer to the parent history object (if set) More... | |
| std::vector< WorkspaceVector > | m_unrolledInputWorkspaces |
| One vector of workspaces for each input workspace property. More... | |
| size_t | m_groupSize |
| Size of the group(s) being processed. More... | |
| bool | m_usingBaseProcessGroups = false |
| distinguish between base processGroups() and overriden/algorithm specific versions More... | |
Static Protected Attributes inherited from Mantid::API::Algorithm | |
| static size_t | g_execCount = 0 |
| Counter to keep track of algorithm execution order. More... | |
MDNormSCD : Generate MD normalization for single crystal diffraction.
Definition at line 20 of file MDNormSCD.h.
| Mantid::MDAlgorithms::MDNormSCD::MDNormSCD | ( | ) |
Constructor.
Definition at line 44 of file MDNormSCD.cpp.
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private |
Runs the BinMD algorithm on the input to provide the output workspace All slicing algorithm properties are passed along.
Definition at line 220 of file MDNormSCD.cpp.
References Mantid::API::Algorithm::createChildAlgorithm(), and Mantid::API::Algorithm::getProperties().
Referenced by exec().
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private |
Stores the X values from each H,K,L dimension as member variables.
Definition at line 349 of file MDNormSCD.cpp.
References m_hIdx, m_hIntegrated, m_hX, m_kIdx, m_kIntegrated, m_kX, m_lIdx, m_lIntegrated, m_lX, and m_normWS.
Referenced by exec().
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Set up starting values for cached variables.
Definition at line 158 of file MDNormSCD.cpp.
References Mantid::API::Algorithm::getProperty(), inputEnergyMode(), m_beamDir, m_hmax, m_hmin, m_inputWS, m_kmax, m_kmin, m_lmax, m_lmin, m_samplePos, and Mantid::Kernel::normalize().
Referenced by exec().
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Linearly interpolate between the points in integrFlux at xValues and save the results in yValues.
| xValues | :: X-values at which to interpolate |
| integrFlux | :: A workspace with the spectra to interpolate |
| sp | :: A workspace index for a spectrum in integrFlux to interpolate. |
| yValues | :: A vector to save the results. |
Definition at line 502 of file MDNormSCD.cpp.
References Mantid::API::MatrixWorkspace::x(), and Mantid::API::MatrixWorkspace::y().
Referenced by calculateNormalization().
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private |
Calculate the points of intersection for the given detector with cuboid surrounding the detector position in HKL.
| intersections | A list of intersections in HKL space |
| theta | Polar angle withd detector |
| phi | Azimuthal angle with detector |
Definition at line 578 of file MDNormSCD.cpp.
References convention, fabs, m_hIntegrated, m_hmax, m_hmin, m_hX, m_kiMax, m_kiMin, m_kIntegrated, m_kmax, m_kmin, m_kX, m_lIntegrated, m_lmax, m_lmin, m_lX, m_rubw, Mantid::Kernel::V3D::X(), Mantid::Kernel::V3D::Y(), and Mantid::Kernel::V3D::Z().
Referenced by calculateNormalization().
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private |
Computed the normalization for the input workspace.
Results are stored in m_normWS
| otherValues | |
| affineTrans | |
| expInfoIndex | current experiment info index |
Definition at line 380 of file MDNormSCD.cpp.
References Mantid::Kernel::AtomicOp(), calcIntegralsForIntersections(), calculateIntersections(), Mantid::Kernel::delta, Mantid::API::Algorithm::getProperty(), Mantid::Kernel::Matrix< T >::Invert(), m_accumulate, m_beamDir, m_inputWS, m_kiMax, m_kiMin, m_normWS, m_numExptInfos, m_rubw, m_samplePos, Mantid::Kernel::Matrix< T >::multiplyPoint(), PARALLEL_CHECK_INTERRUPT_REGION, PARALLEL_END_INTERRUPT_REGION, PARALLEL_START_INTERRUPT_REGION, PRAGMA_OMP, rhs, Mantid::Kernel::threadSafe(), and Mantid::Geometry::x.
Referenced by exec().
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overridevirtual |
Algorithm's category for identification.
Reimplemented from Mantid::API::Algorithm.
Definition at line 53 of file MDNormSCD.cpp.
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private |
Create & cached the normalization workspace.
| dataWS | The binned workspace that will be used for the data |
Definition at line 241 of file MDNormSCD.cpp.
References Mantid::DataObjects::MDHistoWorkspace::clone(), Mantid::API::Algorithm::getProperty(), m_accumulate, m_normWS, and tmp.
Referenced by exec().
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overrideprivatevirtual |
Execute the algorithm.
Implements Mantid::API::Algorithm.
Definition at line 125 of file MDNormSCD.cpp.
References binInputWS(), cacheDimensionXValues(), cacheInputs(), calculateNormalization(), convention, createNormalizationWS(), findIntergratedDimensions(), Mantid::API::Algorithm::g_log, getValuesFromOtherDimensions(), Mantid::Kernel::SingletonHolder< T >::Instance(), m_accumulate, m_normWS, m_numExptInfos, Mantid::API::NoNormalization, Mantid::Kernel::IPropertyManager::setProperty(), and Mantid::Kernel::Logger::warning().
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private |
Checks the normalization workspace against the indices of the original dimensions.
If not found, the corresponding dimension is integrated
| otherDimValues | Values from non-HKL dimensions |
| skipNormalization | [InOut] Sets the flag true if normalization values are outside of original inputs |
Definition at line 292 of file MDNormSCD.cpp.
References m_hIdx, m_hIntegrated, m_hmax, m_hmin, m_kIdx, m_kIntegrated, m_kmax, m_kmin, m_lIdx, m_lIntegrated, m_lmax, m_lmin, m_normWS, Mantid::Kernel::Matrix< T >::numCols(), and Mantid::Kernel::Matrix< T >::numRows().
Referenced by exec().
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private |
Retrieve logged values from non-HKL dimensions.
| skipNormalization | [InOut] Updated to false if any values are outside range measured by input workspace |
| expInfoIndex | current experiment info index |
Definition at line 261 of file MDNormSCD.cpp.
References m_inputWS, and value.
Referenced by exec().
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overrideprivatevirtual |
Initialize the algorithm's properties.
Implements Mantid::API::Algorithm.
Definition at line 67 of file MDNormSCD.cpp.
References Mantid::API::CommonBinsValidator::clone(), Mantid::API::Algorithm::declareProperty(), Mantid::MDAlgorithms::SlicingAlgorithm::getDimensionChars(), Mantid::Kernel::Direction::Input, Mantid::API::PropertyMode::Optional, Mantid::Kernel::Direction::Output, and Mantid::Kernel::Strings::toString().
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private |
Currently looks for the ConvertToMD algorithm in the history.
Definition at line 190 of file MDNormSCD.cpp.
References history, and m_inputWS.
Referenced by cacheInputs().
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overridevirtual |
Algorithm's name for use in the GUI and help.
Implements Mantid::API::Algorithm.
Definition at line 62 of file MDNormSCD.cpp.
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inlineoverridevirtual |
Function to return all of the seeAlso (these are not validated) algorithms related to this algorithm.A default implementation is provided.
Reimplemented from Mantid::API::Algorithm.
Definition at line 26 of file MDNormSCD.h.
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overridevirtual |
Algorithm's summary for use in the GUI and help.
Implements Mantid::API::Algorithm.
Definition at line 56 of file MDNormSCD.cpp.
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overridevirtual |
Algorithm's version for identification.
Implements Mantid::API::Algorithm.
Definition at line 50 of file MDNormSCD.cpp.
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ki-kf for Inelastic convention; kf-ki for Crystallography convention
Definition at line 72 of file MDNormSCD.h.
Referenced by calculateIntersections(), and exec().
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internal flag to accumulate to an existing workspace
Definition at line 74 of file MDNormSCD.h.
Referenced by calculateNormalization(), createNormalizationWS(), and exec().
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Beam direction.
Definition at line 70 of file MDNormSCD.h.
Referenced by cacheInputs(), and calculateNormalization().
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index of h,k,l dimensions in the output workspaces
Definition at line 64 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), and findIntergratedDimensions().
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flag for integrated h,k,l dimensions
Definition at line 58 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), calculateIntersections(), and findIntergratedDimensions().
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Definition at line 56 of file MDNormSCD.h.
Referenced by cacheInputs(), calculateIntersections(), and findIntergratedDimensions().
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limits for h,k,l dimensions
Definition at line 56 of file MDNormSCD.h.
Referenced by cacheInputs(), calculateIntersections(), and findIntergratedDimensions().
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cached X values along dimensions h,k,l
Definition at line 66 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), and calculateIntersections().
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Input workspace.
Definition at line 54 of file MDNormSCD.h.
Referenced by cacheInputs(), calculateNormalization(), getValuesFromOtherDimensions(), and inputEnergyMode().
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Definition at line 64 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), and findIntergratedDimensions().
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Definition at line 62 of file MDNormSCD.h.
Referenced by calculateIntersections(), and calculateNormalization().
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limits for momentum
Definition at line 62 of file MDNormSCD.h.
Referenced by calculateIntersections(), and calculateNormalization().
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Definition at line 58 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), calculateIntersections(), and findIntergratedDimensions().
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Definition at line 56 of file MDNormSCD.h.
Referenced by cacheInputs(), calculateIntersections(), and findIntergratedDimensions().
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Definition at line 56 of file MDNormSCD.h.
Referenced by cacheInputs(), calculateIntersections(), and findIntergratedDimensions().
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Definition at line 66 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), and calculateIntersections().
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Definition at line 64 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), and findIntergratedDimensions().
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Definition at line 58 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), calculateIntersections(), and findIntergratedDimensions().
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Definition at line 56 of file MDNormSCD.h.
Referenced by cacheInputs(), calculateIntersections(), and findIntergratedDimensions().
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Definition at line 56 of file MDNormSCD.h.
Referenced by cacheInputs(), calculateIntersections(), and findIntergratedDimensions().
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Definition at line 66 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), and calculateIntersections().
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Normalization workspace.
Definition at line 52 of file MDNormSCD.h.
Referenced by cacheDimensionXValues(), calculateNormalization(), createNormalizationWS(), exec(), and findIntergratedDimensions().
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number of experiment infos
Definition at line 76 of file MDNormSCD.h.
Referenced by calculateNormalization(), and exec().
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(2*PiRUBW)^-1
Definition at line 60 of file MDNormSCD.h.
Referenced by calculateIntersections(), and calculateNormalization().
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Sample position.
Definition at line 68 of file MDNormSCD.h.
Referenced by cacheInputs(), and calculateNormalization().