RawFileInfo.cpp

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// Mantid Repository : https://github.com/mantidproject/mantid
//
// Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
//   NScD Oak Ridge National Laboratory, European Spallation Source,
//   Institut Laue - Langevin & CSNS, Institute of High Energy Physics, CAS
// SPDX - License - Identifier: GPL - 3.0 +
//----------------------------
// Includes
//----------------------------
#include "MantidDataHandling/RawFileInfo.h"
#include "LoadRaw/isisraw2.h"
#include "MantidAPI/FileProperty.h"
#include "MantidAPI/ITableWorkspace.h"
#include "MantidAPI/TableRow.h"
#include "MantidAPI/WorkspaceFactory.h"
#include <cstdio>
 
// Register the algorithm into the AlgorithmFactory
namespace Mantid::DataHandling {
 
using namespace Mantid::Kernel;
using namespace Mantid::API;
using namespace Mantid::DataHandling;
 
DECLARE_ALGORITHM(RawFileInfo)
 
 
const std::string RawFileInfo::runTitle(const ISISRAW &isisRaw) { return std::string(isisRaw.r_title, 80); }
 
const std::string RawFileInfo::runHeader(const ISISRAW &isisRaw) {
  // coverity doesn't like assuming that the whole hdr struct
  // has each array of characters laid out consecutively in memory
  // so we shouldn't just do:
  // header(isis_raw.hdr.hd_run, 69) to pull out everything
 
  // Separate each section with a character. 80 chars + 6 separators
  const auto &rawHdr = isisRaw.hdr;
  char header[86] = {};
  const size_t byte = sizeof(char);
  const char fieldSep(' ');
  char *start = header;
 
  memcpy(start, rawHdr.inst_abrv, 3 * byte);
  start += 3;
  memset(start, fieldSep, byte); // insert separator
  start += 1;
 
  memcpy(start, rawHdr.hd_run, 5 * byte);
  start += 5;
  memset(start, fieldSep, byte);
  start += 1;
 
  memcpy(start, rawHdr.hd_user, 20 * byte);
  start += 20;
  memset(start, fieldSep, byte);
  start += 1;
 
  memcpy(start, rawHdr.hd_title, 24 * byte);
  start += 24;
  memset(start, fieldSep, byte);
  start += 1;
 
  memcpy(start, rawHdr.hd_date, 12 * byte);
  start += 12;
  memset(start, fieldSep, byte);
  start += 1;
 
  memcpy(start, rawHdr.hd_time, 8 * byte);
  start += 8;
  memset(start, fieldSep, byte);
  start += 1;
 
  memcpy(start, rawHdr.hd_dur, 8 * byte);
  // final field so no space afterward
 
  return std::string(header, header + 86);
}
 
void RawFileInfo::init() {
  const std::vector<std::string> exts{".raw", ".s*"};
  declareProperty(std::make_unique<FileProperty>("Filename", "", FileProperty::Load, exts),
                  "The name of the [[RAW_File | RAW]] file from which to "
                  "extract the parameters");
  declareProperty("GetRunParameters", false,
                  "If this is true, the parameters from the RPB struct are "
                  "placed into a TableWorkspace called Raw_RPB",
                  Direction::Input);
  declareProperty("GetSampleParameters", false,
                  "If this is true, the parameters from the SPB struct are "
                  "placed into a TableWorkspace called Raw_SPB. ",
                  Direction::Input);
  declareProperty("RunTitle", std::string(""), "The run title from the HDR struct", Direction::Output);
  declareProperty("RunHeader", std::string(""), "The run header", Direction::Output);
  declareProperty("SpectraCount", -1, "The number of spectra", Direction::Output);
  declareProperty("TimeChannelCount", -1, "The number of time channels", Direction::Output);
  declareProperty("PeriodCount", -1, "The number of periods", Direction::Output);
}
 
void RawFileInfo::exec() {
  const std::string filename = getPropertyValue("Filename");
 
  ISISRAW2 isis_raw;
  // ReadFrom File with no data
  if (isis_raw.readFromFile(filename.c_str(), false) != 0) {
    g_log.error("Unable to open file " + filename);
    throw Exception::FileError("Unable to open File:", filename);
  }
 
  const std::string title = RawFileInfo::runTitle(isis_raw);
  const std::string header = RawFileInfo::runHeader(isis_raw);
 
  g_log.debug() << "Properties retrieved from " << filename << "\n"
                << "\tRun title: " << title << "\n\tRun header: " << header << "\n";
  setProperty("RunTitle", title);
  setProperty("RunHeader", header);
 
  // Spectra count
  int num_holder = isis_raw.t_nsp1;
  setProperty("SpectraCount", num_holder);
  g_log.debug() << "\tNumber of spectra:  " << num_holder << "\n";
 
  // Time channel count. Note here that the raw file will say N time channels
  // which transforms into
  // (N+1) bin boundaries in Mantid
  num_holder = isis_raw.t_ntc1;
  setProperty("TimeChannelCount", num_holder);
  g_log.debug() << "\tNumber of time channels:  " << num_holder << "\n";
  // The number of periods
  num_holder = isis_raw.t_nper;
  setProperty("PeriodCount", num_holder);
  g_log.debug() << "\tNumber of periods:  " << num_holder << "\n";
 
  // Get the run information if we are told to
  bool get_run_info = getProperty("GetRunParameters");
  if (get_run_info) {
    declareProperty(
        std::make_unique<WorkspaceProperty<API::ITableWorkspace>>("RunParameterTable", "Raw_RPB", Direction::Output),
        "The name of the TableWorkspace in which to store the list "
        "of run parameters");
 
    API::ITableWorkspace_sptr run_table = WorkspaceFactory::Instance().createTable("TableWorkspace");
    run_table->addColumn("int", "r_dur");      // actual run duration
    run_table->addColumn("int", "r_durunits"); // scaler for above (1=seconds)
    run_table->addColumn("int",
                         "r_dur_freq");         // testinterval for above (seconds)
    run_table->addColumn("int", "r_dmp");       // dump interval
    run_table->addColumn("int", "r_dmp_units"); // scaler for above
    run_table->addColumn("int", "r_dmp_freq");  // interval for above
    run_table->addColumn("int",
                         "r_freq"); // 2**k where source frequency = 50 / 2**k
    run_table->addColumn("double",
                         "r_gd_prtn_chrg"); // good proton charge (uA.hour)
    run_table->addColumn("double",
                         "r_tot_prtn_chrg");     // total proton charge (uA.hour)
    run_table->addColumn("int", "r_goodfrm");    // good frames
    run_table->addColumn("int", "r_rawfrm");     // raw frames
    run_table->addColumn("int", "r_dur_wanted"); // requested run duration
                                                 // (units as for "duration"
                                                 // above)
    run_table->addColumn("int", "r_dur_secs");   // actual run duration in seconds
    run_table->addColumn("int", "r_mon_sum1");   // monitor sum 1
    run_table->addColumn("int", "r_mon_sum2");   // monitor sum 2
    run_table->addColumn("int", "r_mon_sum3");   // monitor sum 3
    run_table->addColumn("str", "r_enddate");    // format DD-MMM-YYYY
    run_table->addColumn("str", "r_endtime");    // format HH-MM-SS
    run_table->addColumn("int", "r_prop");       // RB (proposal) number
 
    API::TableRow t = run_table->appendRow();
    t << isis_raw.rpb.r_dur << isis_raw.rpb.r_durunits << isis_raw.rpb.r_dur_freq << isis_raw.rpb.r_dmp
      << isis_raw.rpb.r_dmp_units << isis_raw.rpb.r_dmp_freq << isis_raw.rpb.r_freq
      << static_cast<double>(isis_raw.rpb.r_gd_prtn_chrg) << static_cast<double>(isis_raw.rpb.r_tot_prtn_chrg)
      << isis_raw.rpb.r_goodfrm << isis_raw.rpb.r_rawfrm << isis_raw.rpb.r_dur_wanted << isis_raw.rpb.r_dur_secs
      << isis_raw.rpb.r_mon_sum1 << isis_raw.rpb.r_mon_sum2 << isis_raw.rpb.r_mon_sum3
      << std::string(isis_raw.rpb.r_enddate, 11) << std::string(isis_raw.rpb.r_endtime, 8) << isis_raw.rpb.r_prop;
 
    setProperty("RunParameterTable", run_table);
  }
 
  bool getSampleParameters = getProperty("GetSampleParameters");
  if (getSampleParameters) {
    declareProperty(
        std::make_unique<WorkspaceProperty<API::ITableWorkspace>>("SampleParameterTable", "Raw_SPB", Direction::Output),
        "The name of the TableWorkspace in which to store the list "
        "of sample parameters");
 
    API::ITableWorkspace_sptr sample_table = WorkspaceFactory::Instance().createTable("TableWorkspace");
    sample_table->addColumn("int", "e_posn");      //< sample changer position
    sample_table->addColumn("int", "e_type");      //< sample type (1=sample+can,2=empty can)
    sample_table->addColumn("int", "e_geom");      //< sample geometry
    sample_table->addColumn("double", "e_thick");  //< sample thickness normal to sample (mm)
    sample_table->addColumn("double", "e_height"); //< sample height (mm)
    sample_table->addColumn("double", "e_width");  //< sample width (mm)
    sample_table->addColumn("double",
                            "e_omega");           //< omega sample angle (degrees)
    sample_table->addColumn("double", "e_chi");   //< chi sample angle (degrees)
    sample_table->addColumn("double", "e_phi");   //< phi sample angle (degrees)
    sample_table->addColumn("double", "e_scatt"); //< scattering geometry (1=trans, 2 =reflect)
    sample_table->addColumn("double",
                            "e_xscatt"); //< sample coherent scattering cross section (barn)
    sample_table->addColumn("double",
                            "samp_cs_inc"); //< sample incoherent cross section
    sample_table->addColumn("double",
                            "samp_cs_abs"); //< sample absorption cross section
    sample_table->addColumn("double",
                            "e_dens");               //< sample number density (atoms.A-3)
    sample_table->addColumn("double", "e_canthick"); //< can wall thickness (mm)
    sample_table->addColumn("double",
                            "e_canxsect");           //< can coherent scattering cross section (barn)
    sample_table->addColumn("double", "can_cs_inc"); //< dunno
    sample_table->addColumn("double", "can_cs_abs"); //< dunno
    sample_table->addColumn("double",
                            "can_nd"); //< can number density (atoms.A-3)
    sample_table->addColumn("str",
                            "e_name");          //< sample name of chemical formula
    sample_table->addColumn("int", "e_equip");  //< dunno
    sample_table->addColumn("int", "e_eqname"); //< dunno
 
    const auto nameLength = static_cast<int>(strlen(isis_raw.spb.e_name));
    std::string name(isis_raw.spb.e_name, nameLength);
 
    API::TableRow t = sample_table->appendRow();
    t << isis_raw.spb.e_posn << isis_raw.spb.e_type << isis_raw.spb.e_geom << static_cast<double>(isis_raw.spb.e_thick)
      << static_cast<double>(isis_raw.spb.e_height) << static_cast<double>(isis_raw.spb.e_width)
      << static_cast<double>(isis_raw.spb.e_omega) << static_cast<double>(isis_raw.spb.e_chi)
      << static_cast<double>(isis_raw.spb.e_phi) << static_cast<double>(isis_raw.spb.e_scatt)
      << static_cast<double>(isis_raw.spb.e_xscatt) << static_cast<double>(isis_raw.spb.samp_cs_inc)
      << static_cast<double>(isis_raw.spb.samp_cs_abs) << static_cast<double>(isis_raw.spb.e_dens)
      << static_cast<double>(isis_raw.spb.e_canthick) << static_cast<double>(isis_raw.spb.e_canxsect)
      << static_cast<double>(isis_raw.spb.can_cs_inc) << static_cast<double>(isis_raw.spb.can_cs_abs)
      << static_cast<double>(isis_raw.spb.can_nd) << name << isis_raw.spb.e_equip << isis_raw.spb.e_eqname;
 
    setProperty("SampleParameterTable", sample_table);
  }
 
  // This is not going to be a slow algorithm
  progress(1.0);
}
 
} // namespace Mantid::DataHandling