NexusTester.cpp

Go to the documentation of this file.

// Mantid Repository : https://github.com/mantidproject/mantid
//
// Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
//   NScD Oak Ridge National Laboratory, European Spallation Source,
//   Institut Laue - Langevin & CSNS, Institute of High Energy Physics, CAS
// SPDX - License - Identifier: GPL - 3.0 +
#include "MantidDataHandling/NexusTester.h"
#include "MantidAPI/FileProperty.h"
#include "MantidKernel/CPUTimer.h"
#include "MantidKernel/ListValidator.h"
 
#include <Poco/File.h>
#include <Poco/Thread.h>
 
#include <cstdlib>
#include <nexus/NeXusFile.hpp>
 
using namespace Mantid::Kernel;
using namespace Mantid::API;
 
namespace Mantid::DataHandling {
 
// Register the algorithm into the AlgorithmFactory
DECLARE_ALGORITHM(NexusTester)
 
//----------------------------------------------------------------------------------------------
const std::string NexusTester::name() const { return "NexusTester"; }
 
int NexusTester::version() const { return 1; }
 
const std::string NexusTester::category() const { return "Utility\\Development"; }
 
//----------------------------------------------------------------------------------------------
 
//----------------------------------------------------------------------------------------------
void NexusTester::init() {
  std::initializer_list<std::string> exts = {".nxs"};
 
  declareProperty(std::make_unique<FileProperty>("SaveFilename", "", FileProperty::OptionalSave, exts),
                  "The name of the Nexus file to write.");
 
  declareProperty(std::make_unique<FileProperty>("LoadFilename", "", FileProperty::OptionalLoad, exts),
                  "The name of the Nexus file to load (optional).\n"
                  "Must have been written by NexusTester algorithm.");
 
  declareProperty("ChunkSize", 10, "Chunk size for writing/loading, in kb of data");
  declareProperty("NumChunks", 10, "Number of chunks to load or write");
  declareProperty("Compress", true, "For writing: compress the data.");
  declareProperty("HDFCacheSize", 2000000, "HDF cache size, in bytes");
  declareProperty("ClearDiskCache", false,
                  "Clear the linux disk cache before loading.\n"
                  "Only works on linux AND you need to run MantidPlot in sudo mode (!).");
 
  std::vector<std::string> types{"Zeros", "Incrementing Numbers", "Random Numbers"};
  declareProperty("FakeData", "Incrementing Numbers", std::make_shared<StringListValidator>(types),
                  "For writing: type of fake data to generate.");
 
  declareProperty("CompressionFactor", 0.0, "The size of the file divided by the the size of the data on disk.",
                  Direction::Output);
  declareProperty("SaveSpeed", 0.0, "The measured rate of saving the file, in MB (of data)/sec.", Direction::Output);
  declareProperty("LoadSpeed", 0.0, "The measured rate of loading the file, in MB (of data)/sec.", Direction::Output);
}
 
//----------------------------------------------------------------------------------------------
void NexusTester::exec() {
  std::string SaveFilename = getPropertyValue("SaveFilename");
  std::string LoadFilename = getPropertyValue("LoadFilename");
  std::string FakeDataType = getPropertyValue("FakeData");
  int ChunkSizeKb = getProperty("ChunkSize");
  int NumChunks = getProperty("NumChunks");
  bool Compress = getProperty("Compress");
 
  if (ChunkSizeKb <= 0)
    throw std::invalid_argument("ChunkSize must be > 0");
  if (NumChunks <= 0)
    throw std::invalid_argument("NumChunks must be > 0");
 
  // Size of the chunk in number of integers
  size_t chunkSize = ChunkSizeKb * 1024 / sizeof(uint32_t);
  // ----------- Generate the fake data -----------------------------
  auto fakeData = std::vector<uint32_t>(chunkSize);
  if (FakeDataType == "Zeros") {
    for (size_t i = 0; i < chunkSize; i++)
      fakeData[i] = 0;
  } else if (FakeDataType == "Incrementing Numbers") {
    for (size_t i = 0; i < chunkSize; i++)
      fakeData[i] = uint32_t(i);
  } else if (FakeDataType == "Random Numbers") {
    for (size_t i = 0; i < chunkSize; i++)
      fakeData[i] = rand();
  }
 
  std::vector<int64_t> dims;
  dims.emplace_back(int64_t(chunkSize) * NumChunks);
  std::vector<int64_t> chunkDims;
  chunkDims.emplace_back(int64_t(chunkSize));
 
  // Total size in BYTES
  double dataSizeMB = double(chunkSize * NumChunks * sizeof(uint32_t)) / (1024. * 1024.);
  g_log.notice() << "Data size is " << dataSizeMB << " MB\n";
 
  // ------------------------ Save a File ----------------------------
  if (!SaveFilename.empty()) {
    ::NeXus::File file(SaveFilename, NXACC_CREATE5);
    file.makeGroup("FakeDataGroup", "NXdata", true);
    file.makeCompData("FakeData", ::NeXus::UINT32, dims, Compress ? ::NeXus::LZW : ::NeXus::NONE, chunkDims, true);
    Progress prog(this, 0.0, 1.0, NumChunks);
    CPUTimer tim;
    for (int i = 0; i < NumChunks; i++) {
      std::vector<int64_t> startDims;
      startDims.emplace_back(i * int64_t(chunkSize));
      file.putSlab(fakeData.data(), startDims, chunkDims);
      prog.report();
    }
    file.close();
    double seconds = tim.elapsedWallClock(false);
    double MBperSec = dataSizeMB / seconds;
    g_log.notice() << tim << " to save the file = " << MBperSec << " MB/sec\n";
    this->setProperty("SaveSpeed", MBperSec);
  }
 
  // Check the size of the file created/loaded
  Poco::File info(SaveFilename.empty() ? LoadFilename : SaveFilename);
  double fileSizeMB = double(info.getSize()) / (1024. * 1024.);
  g_log.notice() << "File size is " << fileSizeMB << " MB\n";
 
  double CompressionFactor = fileSizeMB / dataSizeMB;
  this->setProperty("CompressionFactor", CompressionFactor);
 
  bool ClearDiskCache = this->getProperty("ClearDiskCache");
  if (ClearDiskCache) {
    g_log.information() << "Clearing disk cache.\n";
    if (system("sync ; echo 3 > /proc/sys/vm/drop_caches") != 0)
      g_log.error("Error clearing disk cache");
    Poco::Thread::sleep(100);
  }
 
  // ------------------------ Load a File ----------------------------
  if (!LoadFilename.empty()) {
    ::NeXus::File file(LoadFilename, NXACC_READ);
    int HDFCacheSize = getProperty("HDFCacheSize");
    NXsetcache(HDFCacheSize);
    file.openGroup("FakeDataGroup", "NXdata");
    Progress prog(this, 0.0, 1.0, NumChunks);
    CPUTimer tim;
 
    for (int i = 0; i < NumChunks; i++) {
      file.openData("FakeData");
      std::vector<int64_t> startDims;
      startDims.emplace_back(i * int64_t(chunkSize));
      file.getSlab(fakeData.data(), startDims, chunkDims);
      prog.report();
      file.closeData();
    }
 
    file.close();
 
    double seconds = tim.elapsedWallClock(false);
    double MBperSec = dataSizeMB / seconds;
    this->setProperty("LoadSpeed", MBperSec);
    g_log.notice() << tim << " to load the file = " << MBperSec << " MB/sec (data), " << MBperSec * CompressionFactor
                   << " MB/sec (file)\n";
  }
}
 
} // namespace Mantid::DataHandling