Mantid
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Data processor algorithm to be used as a parent to workflow algorithms. More...
#include <DataProcessorAlgorithm.h>
Public Member Functions | |
GenericDataProcessorAlgorithm () | |
Constructor. More... | |
Kernel::IPropertyManager::TypedValue | getProperty (const std::string &name) const override |
Get the property held by this object. More... | |
std::string | getPropertyValue (const std::string &name) const override |
Get the property held by this object. More... | |
Protected Member Functions | |
Workspace_sptr | assemble (const std::string &partialWSName, const std::string &outputWSName) |
Assemble the partial workspaces from all MPI processes. More... | |
Workspace_sptr | assemble (Workspace_sptr partialWS) |
Assemble the partial workspaces from all MPI processes. More... | |
void | copyProperty (const API::Algorithm_sptr &alg, const std::string &name) |
Copy a property from an existing algorithm. More... | |
std::shared_ptr< Algorithm > | createChildAlgorithm (const std::string &name, const double startProgress=-1., const double endProgress=-1., const bool enableLogging=true, const int &version=-1) override |
Create a Child Algorithm. More... | |
virtual ITableWorkspace_sptr | determineChunk (const std::string &filename) |
MatrixWorkspace_sptr | divide (const MatrixWorkspace_sptr lhs, const double &rhsValue) |
Divide a matrix workspace by a single value. More... | |
MatrixWorkspace_sptr | divide (const MatrixWorkspace_sptr lhs, const MatrixWorkspace_sptr rhs) |
Divide a matrix workspace by another matrix workspace. More... | |
void | forwardProperties () |
int | getNThreads () |
Return the number of MPI processes running. More... | |
std::shared_ptr< Kernel::PropertyManager > | getProcessProperties (const std::string &propertyManager=std::string()) const |
Get the property manager object of a given name from the property manager data service, or create a new one. More... | |
bool | isMainThread () |
Return true if we are running on the main thread. More... | |
Workspace_sptr | load (const std::string &inputData, const bool loadQuiet=false) |
Determine what kind of input data we have and load it. More... | |
virtual MatrixWorkspace_sptr | loadChunk (const size_t rowIndex) |
void | mapPropertyName (const std::string &nameInProp, const std::string &nameInPropManager) |
Declare mapping of property name to name in the PropertyManager. More... | |
MatrixWorkspace_sptr | minus (const MatrixWorkspace_sptr lhs, const double &rhsValue) |
Subract a single value from a matrix workspace. More... | |
MatrixWorkspace_sptr | minus (const MatrixWorkspace_sptr lhs, const MatrixWorkspace_sptr rhs) |
Subract a matrix workspace by another matrix workspace. More... | |
MatrixWorkspace_sptr | multiply (const MatrixWorkspace_sptr lhs, const double &rhsValue) |
Multiply a matrix workspace by a single value. More... | |
MatrixWorkspace_sptr | multiply (const MatrixWorkspace_sptr lhs, const MatrixWorkspace_sptr rhs) |
Multiply a matrix workspace by another matrix workspace. More... | |
MatrixWorkspace_sptr | plus (const MatrixWorkspace_sptr lhs, const double &rhsValue) |
Add a single value to a matrix workspace. More... | |
MatrixWorkspace_sptr | plus (const MatrixWorkspace_sptr lhs, const MatrixWorkspace_sptr rhs) |
Add a matrix workspace to another matrix workspace. More... | |
void | saveNexus (const std::string &outputWSName, const std::string &outputFile) |
Save a workspace as a nexus file, with check for which thread we are executing in. More... | |
void | setAccumAlg (const std::string &alg) |
void | setLoadAlg (const std::string &alg) |
void | setLoadAlgFileProp (const std::string &filePropName) |
void | setPropManagerPropName (const std::string &propName) |
std::vector< std::string > | splitInput (const std::string &input) |
Protected Attributes | |
bool | m_useMPI |
MPI option. If false, we will use one job event if MPI is available. More... | |
Private Member Functions | |
MatrixWorkspace_sptr | createWorkspaceSingleValue (const double &rhsValue) |
Create a matrix workspace from a single number. More... | |
template<typename LHSType , typename RHSType , typename ResultType > | |
ResultType | executeBinaryAlgorithm (const std::string &algorithmName, const LHSType lhs, const RHSType rhs) |
void | visualStudioC4661Workaround () |
MANTID_API_DLL void | visualStudioC4661Workaround () |
MANTID_API_DLL void | visualStudioC4661Workaround () |
Private Attributes | |
std::string | m_accumulateAlg |
The name of the algorithm to invoke when accumulating data chunks. More... | |
std::string | m_loadAlg |
The name of the algorithm to invoke when loading data. More... | |
std::string | m_loadAlgFileProp |
An alternate filename property for the load algorithm. More... | |
std::map< std::string, std::string > | m_nameToPMName |
Map property names to names in supplied properties manager. More... | |
std::string | m_propertyManagerPropertyName |
The name of the parameter that names the property manager. More... | |
Data processor algorithm to be used as a parent to workflow algorithms.
This algorithm provides utility methods to load and process data.
Definition at line 29 of file DataProcessorAlgorithm.h.
Mantid::API::GenericDataProcessorAlgorithm< Base >::GenericDataProcessorAlgorithm |
Constructor.
Definition at line 37 of file DataProcessorAlgorithm.cpp.
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Assemble the partial workspaces from all MPI processes.
partialWSName | :: Name of the workspace to assemble |
outputWSName | :: Name of the assembled workspace (available in main thread only) |
Definition at line 237 of file DataProcessorAlgorithm.cpp.
References Mantid::Kernel::SingletonHolder< T >::Instance().
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Assemble the partial workspaces from all MPI processes.
partialWS | :: workspace to assemble thread only) |
Definition at line 211 of file DataProcessorAlgorithm.cpp.
References Mantid::Kernel::SingletonHolder< T >::Instance().
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::assembleProxy(), and Mantid::WorkflowAlgorithms::LoadEventAndCompress::exec().
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Copy a property from an existing algorithm.
alg | |
name |
std::runtime_error | If you ask to copy a non-existent property |
Definition at line 128 of file DataProcessorAlgorithm.cpp.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::copyPropertiesProxy(), Mantid::Algorithms::CarpenterSampleCorrection::init(), and Mantid::WorkflowAlgorithms::LoadEventAndCompress::init().
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Create a Child Algorithm.
A call to this method creates a child algorithm object. Using this mechanism instead of creating daughter algorithms directly via the new operator is prefered since then the framework can take care of all of the necessary book-keeping.
Overrides the method of the same name in Algorithm to enable history tracking by default.
name | :: The concrete algorithm class of the Child Algorithm |
startProgress | :: The percentage progress value of the overall algorithm where this child algorithm starts |
endProgress | :: The percentage progress value of the overall algorithm where this child algorithm ends |
enableLogging | :: Set to false to disable logging from the child algorithm |
version | :: The version of the child algorithm to create. By default gives the latest version. |
Definition at line 66 of file DataProcessorAlgorithm.cpp.
References Mantid::API::Algorithm::createChildAlgorithm().
Referenced by Mantid::CurveFitting::Algorithms::QENSFitSequential::addAdditionalLogs(), Mantid::CurveFitting::Algorithms::QENSFitSequential::addFitRangeLogs(), Mantid::MDAlgorithms::CreateMD::addSampleLog(), Mantid::Algorithms::ExtractQENSMembers::appendSpectra(), Mantid::WorkflowAlgorithms::MuonProcess::applyDTC(), Mantid::Algorithms::CarpenterSampleCorrection::calculateCorrection(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::conjoinWorkspaces(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::convertOffsetsToCal(), Mantid::WorkflowAlgorithms::SofTwoThetaTOF::convertToConstantL2(), Mantid::MDAlgorithms::CreateMD::convertToMD(), Mantid::WorkflowAlgorithms::SofTwoThetaTOF::convertToTwoTheta(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::convertUnits(), Mantid::CurveFitting::Algorithms::QENSFitSequential::copyLogs(), Mantid::WorkflowAlgorithms::MuonProcess::correctWorkspace(), Mantid::MDAlgorithms::AccumulateMD::createMDWorkspace(), Mantid::CurveFitting::Algorithms::QENSFitSequential::deleteTemporaryWorkspaces(), Mantid::Algorithms::CalculateCarpenterSampleCorrection::deleteWorkspace(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::determineChunk(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::diffractionFocus(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::doSortEvents(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::editInstrument(), Mantid::Algorithms::PerformIndexOperations::exec(), Mantid::Algorithms::SofQW::exec(), Mantid::Algorithms::StripVanadiumPeaks2::exec(), Mantid::MDAlgorithms::AccumulateMD::exec(), Mantid::MDAlgorithms::CutMD::exec(), Mantid::MDAlgorithms::IntegrateEllipsoids::exec(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::exec(), Mantid::WorkflowAlgorithms::ComputeSensitivity::exec(), Mantid::WorkflowAlgorithms::DgsReduction::exec(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::exec(), Mantid::WorkflowAlgorithms::SANSBeamFluxCorrection::exec(), Mantid::Algorithms::ExtractQENSMembers::extractSpectrum(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::filterResonances(), Mantid::Algorithms::ExtractQENSMembers::getQValues(), Mantid::WorkflowAlgorithms::SofTwoThetaTOF::groupByTwoTheta(), Mantid::WorkflowAlgorithms::MuonProcess::groupWorkspaces(), Mantid::Algorithms::ExtractQENSMembers::groupWorkspaces(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::loadCalFile(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::loadChunk(), Mantid::WorkflowAlgorithms::DgsReduction::loadGroupingFile(), Mantid::WorkflowAlgorithms::DgsReduction::loadHardMask(), Mantid::WorkflowAlgorithms::DgsReduction::loadInputData(), Mantid::WorkflowAlgorithms::SANSBeamFluxCorrection::loadReference(), Mantid::MDAlgorithms::CreateMD::loadWs(), Mantid::WorkflowAlgorithms::SofTwoThetaTOF::maskEmptyBins(), Mantid::MDAlgorithms::CreateMD::merge_runs(), Mantid::Algorithms::CarpenterSampleCorrection::minus(), Mantid::Algorithms::CarpenterSampleCorrection::multiply(), Mantid::CurveFitting::Algorithms::QENSFitSequential::performFit(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::processChunk(), Mantid::CurveFitting::Algorithms::QENSFitSequential::processIndirectFitParameters(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::rebin(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::rebinRagged(), Mantid::WorkflowAlgorithms::SofTwoThetaTOF::rebinToNonRagged(), Mantid::CurveFitting::Algorithms::QENSFitSequential::renameWorkspaces(), Mantid::MDAlgorithms::CreateMD::setGoniometer(), Mantid::MDAlgorithms::CreateMD::setUB(), and Mantid::Algorithms::CalculateCarpenterSampleCorrection::setUncertainties().
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Create a matrix workspace from a single number.
Create a workspace that contains just a single Y value.
rhsValue | :: the value to convert to a single value matrix workspace |
Definition at line 517 of file DataProcessorAlgorithm.cpp.
References Mantid::Kernel::SingletonHolder< T >::Instance().
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Reimplemented in Mantid::WorkflowAlgorithms::LoadEventAndCompress.
Definition at line 194 of file DataProcessorAlgorithm.cpp.
References UNUSED_ARG.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::determineChunkProxy().
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Divide a matrix workspace by a single value.
lhs | :: the workspace on the left hand side of the divide symbol |
rhsValue | :: the value on the right hand side of the divide symbol |
Definition at line 423 of file DataProcessorAlgorithm.cpp.
References Mantid::API::createWorkspaceSingleValue().
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Divide a matrix workspace by another matrix workspace.
lhs | :: the workspace on the left hand side of the divide symbol |
rhs | :: the workspace on the right hand side of the divide symbol |
Definition at line 410 of file DataProcessorAlgorithm.cpp.
References rhs.
Referenced by Mantid::WorkflowAlgorithms::DgsReduction::exec().
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Definition at line 82 of file DataProcessorAlgorithm.h.
References rhs.
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Definition at line 395 of file DataProcessorAlgorithm.cpp.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::forwardPropertiesProxy().
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Return the number of MPI processes running.
Definition at line 292 of file DataProcessorAlgorithm.cpp.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::getNThreadsProxy().
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Get the property manager object of a given name from the property manager data service, or create a new one.
If the PropertyManager name is missing (default) this will look at m_propertyManagerPropertyName to get the correct value;
propertyManager | :: Name of the property manager to retrieve. |
Definition at line 367 of file DataProcessorAlgorithm.cpp.
References Mantid::Kernel::SingletonHolder< T >::Instance().
Referenced by Mantid::WorkflowAlgorithms::ComputeSensitivity::exec(), Mantid::WorkflowAlgorithms::SANSBeamFluxCorrection::exec(), and Mantid::PythonInterface::DataProcessorAdapter< Base >::getProcessPropertiesProxy().
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Get the property held by this object.
If the value is the default see if it contained in the PropertyManager.
name |
Definition at line 174 of file DataProcessorAlgorithm.cpp.
References Mantid::API::Algorithm::getProperty().
Referenced by Mantid::CurveFitting::Algorithms::QENSFitSequential::addFitRangeLogs(), Mantid::WorkflowAlgorithms::SofTwoThetaTOF::clarifyAngleStep(), Mantid::WorkflowAlgorithms::MuonProcess::correctWorkspace(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::determineChunk(), Mantid::Algorithms::CalculateCarpenterSampleCorrection::exec(), Mantid::Algorithms::CarpenterSampleCorrection::exec(), Mantid::Algorithms::PerformIndexOperations::exec(), Mantid::Algorithms::SofQW::exec(), Mantid::Algorithms::StripVanadiumPeaks2::exec(), Mantid::CurveFitting::Algorithms::QENSFitSequential::exec(), Mantid::MDAlgorithms::AccumulateMD::exec(), Mantid::MDAlgorithms::CreateMD::exec(), Mantid::MDAlgorithms::CutMD::exec(), Mantid::MDAlgorithms::IntegrateEllipsoids::exec(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::exec(), Mantid::WorkflowAlgorithms::DgsReduction::exec(), Mantid::Algorithms::ExtractQENSMembers::exec(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::exec(), Mantid::WorkflowAlgorithms::MuonProcess::exec(), Mantid::WorkflowAlgorithms::SANSBeamFluxCorrection::exec(), Mantid::WorkflowAlgorithms::SofTwoThetaTOF::exec(), Mantid::CurveFitting::Algorithms::QENSFitSequential::extractMembersAlgorithm(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getAdditionalLogStrings(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getDatasetGrouping(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getInputString(), Mantid::Algorithms::ExtractQENSMembers::getInputWorkspaces(), Mantid::WorkflowAlgorithms::DgsReduction::getParameter(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getUniqueParameterNames(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::getVecPropertyFromPmOrSelf(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getWorkspaces(), Mantid::WorkflowAlgorithms::SofTwoThetaTOF::groupByTwoTheta(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::loadCalFile(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::loadChunk(), Mantid::WorkflowAlgorithms::DgsReduction::loadGroupingFile(), Mantid::WorkflowAlgorithms::DgsReduction::loadHardMask(), Mantid::WorkflowAlgorithms::DgsReduction::loadInputData(), Mantid::CurveFitting::Algorithms::QENSFitSequential::performFit(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::processChunk(), Mantid::CurveFitting::Algorithms::QENSFitSequential::processIndirectFitParameters(), Mantid::CurveFitting::Algorithms::QENSFitSequential::validateInputs(), Mantid::MDAlgorithms::AccumulateMD::validateInputs(), Mantid::MDAlgorithms::CreateMD::validateInputs(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::validateInputs(), Mantid::Algorithms::ExtractQENSMembers::validateInputs(), and Mantid::WorkflowAlgorithms::MuonProcess::validateInputs().
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Get the property held by this object.
If the value is the default see if it is contained in the PropertyManager.
name |
Definition at line 147 of file DataProcessorAlgorithm.cpp.
References Mantid::API::Algorithm::getPropertyValue().
Referenced by Mantid::MDAlgorithms::AccumulateMD::createMDWorkspace(), Mantid::Algorithms::CalculateCarpenterSampleCorrection::exec(), Mantid::CurveFitting::Algorithms::QENSFitSequential::exec(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::exec(), Mantid::WorkflowAlgorithms::ComputeSensitivity::exec(), Mantid::WorkflowAlgorithms::DgsReduction::exec(), Mantid::WorkflowAlgorithms::LoadEventAndCompress::exec(), Mantid::WorkflowAlgorithms::AlignAndFocusPowder::filterResonances(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getAdditionalLogStrings(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getDatasetGrouping(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getInputString(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getOutputBaseName(), Mantid::CurveFitting::Algorithms::QENSFitSequential::getWorkspaces(), Mantid::WorkflowAlgorithms::DgsReduction::loadInputData(), Mantid::WorkflowAlgorithms::SANSBeamFluxCorrection::loadReference(), Mantid::CurveFitting::Algorithms::QENSFitSequential::performFit(), Mantid::CurveFitting::Algorithms::QENSFitSequential::validateInputs(), and Mantid::WorkflowAlgorithms::AlignAndFocusPowder::validateInputs().
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Return true if we are running on the main thread.
Definition at line 281 of file DataProcessorAlgorithm.cpp.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::isMainThreadProxy().
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Determine what kind of input data we have and load it.
inputData | :: File path or workspace name |
loadQuiet | :: If true then the output is not stored in the ADS |
Definition at line 306 of file DataProcessorAlgorithm.cpp.
References Mantid::Kernel::FacilityInfo::extensions(), Mantid::API::g_log, Mantid::Kernel::SingletonHolder< T >::Instance(), and Mantid::Kernel::Logger::notice().
Referenced by Mantid::WorkflowAlgorithms::DgsReduction::loadInputData(), and Mantid::PythonInterface::DataProcessorAdapter< Base >::loadProxy().
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Reimplemented in Mantid::WorkflowAlgorithms::LoadEventAndCompress.
Definition at line 200 of file DataProcessorAlgorithm.cpp.
References UNUSED_ARG.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::loadChunkProxy().
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Declare mapping of property name to name in the PropertyManager.
This is used by getPropertyValue(const string &) and getProperty(const string&).
nameInProp | Name of the property as declared in Algorithm::init(). |
nameInPropManager | Name of the property in the PropertyManager. |
Definition at line 111 of file DataProcessorAlgorithm.cpp.
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Subract a single value from a matrix workspace.
lhs | :: the workspace on the left hand side of the subtraction symbol |
rhsValue | :: the workspace on the right hand side of the subtraction symbol |
Definition at line 505 of file DataProcessorAlgorithm.cpp.
References Mantid::API::createWorkspaceSingleValue().
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Subract a matrix workspace by another matrix workspace.
Subract a matrix workspace from another matrix workspace.
lhs | :: the workspace on the left hand side of the subtraction symbol |
rhs | :: the workspace on the right hand side of the subtraction symbol |
Definition at line 491 of file DataProcessorAlgorithm.cpp.
References rhs.
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Multiply a matrix workspace by a single value.
lhs | :: the workspace on the left hand side of the multiplication symbol |
rhsValue | :: the value on the right hand side of the multiplication symbol |
Definition at line 453 of file DataProcessorAlgorithm.cpp.
References Mantid::API::createWorkspaceSingleValue().
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Multiply a matrix workspace by another matrix workspace.
lhs | :: the workspace on the left hand side of the multiplication symbol |
rhs | :: the workspace on the right hand side of the multiplication symbol |
Definition at line 438 of file DataProcessorAlgorithm.cpp.
References rhs.
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Add a single value to a matrix workspace.
Add a single value to another matrix workspace.
lhs | :: the workspace on the left hand side of the addition symbol |
rhsValue | :: the value on the right hand side of the addition symbol |
Definition at line 479 of file DataProcessorAlgorithm.cpp.
References Mantid::API::createWorkspaceSingleValue().
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Add a matrix workspace to another matrix workspace.
lhs | :: the workspace on the left hand side of the addition symbol |
rhs | :: the workspace on the right hand side of the addition symbol |
Definition at line 466 of file DataProcessorAlgorithm.cpp.
References rhs.
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Save a workspace as a nexus file, with check for which thread we are executing in.
outputWSName | :: Name of the workspace to save |
outputFile | :: Path to the Nexus file to save |
Definition at line 267 of file DataProcessorAlgorithm.cpp.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::saveNexusProxy().
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Definition at line 92 of file DataProcessorAlgorithm.cpp.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::setAccumAlgProxy().
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Definition at line 79 of file DataProcessorAlgorithm.cpp.
Referenced by Mantid::WorkflowAlgorithms::DgsReduction::loadInputData(), and Mantid::PythonInterface::DataProcessorAdapter< Base >::setLoadAlgProxy().
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Definition at line 85 of file DataProcessorAlgorithm.cpp.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::setLoadAlgFilePropProxy().
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Definition at line 98 of file DataProcessorAlgorithm.cpp.
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Definition at line 390 of file DataProcessorAlgorithm.cpp.
References UNUSED_ARG.
Referenced by Mantid::PythonInterface::DataProcessorAdapter< Base >::splitInputProxy().
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Definition at line 524 of file DataProcessorAlgorithm.cpp.
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Definition at line 531 of file DataProcessorAlgorithm.cpp.
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The name of the algorithm to invoke when accumulating data chunks.
Definition at line 105 of file DataProcessorAlgorithm.h.
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The name of the algorithm to invoke when loading data.
Definition at line 103 of file DataProcessorAlgorithm.h.
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An alternate filename property for the load algorithm.
Definition at line 107 of file DataProcessorAlgorithm.h.
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Map property names to names in supplied properties manager.
Definition at line 112 of file DataProcessorAlgorithm.h.
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The name of the parameter that names the property manager.
The default value is "ReductionProperties".
Definition at line 110 of file DataProcessorAlgorithm.h.
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MPI option. If false, we will use one job event if MPI is available.
Definition at line 53 of file DataProcessorAlgorithm.h.